Gene Rcas_2076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2076 
Symbol 
ID5539556 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2662818 
End bp2663960 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content63% 
IMG OID640894211 
ProductIS605 family transposase OrfB 
Protein accessionYP_001432180 
Protein GI156742051 
COG category[L] Replication, recombination and repair 
COG ID[COG0675] Transposase and inactivated derivatives 
TIGRFAM ID[TIGR01766] transposase, IS605 OrfB family, central region 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAAGA CCTTCGTCTA TCGCCTGTAT CCGAGCAAAC CGCAAGCGCG GCGGCTGGAC 
AGCACGCTCG AAACCTGCCG ACGCTGGTAC AACCAGTGTC TTGCCGAGCG GCGCGATGCG
TACCAGCAGC GTGGCGAGAC GGCGGGCAAG TTCGCGCAAC TGGCGAAGGT GAAGGAGTAC
AAGGCGCTCA ACCCGCATGC TAAAGGCATC CATAGCCATG TGTTGCAAGT GGTCGTGTCT
GATCTGGACA AGGCGTTTCA GGCGTTCTTC CGACGCGTGA AGGCAGGCGA AACGCCGGGG
TATCCTCGCT TTCGGGGGCG TAACCGCTTC GACTCGTTCG GCTTCAAGGA GTATGGGAAC
GGCTTCAAAG CGGACGGGAG GCGGCTCCGC TTGTCGGGTA TTGGGCGGGT TGCAGTGCGC
TGGAATCGTC CGCTCGAAGG CCAGATCAAG ACCGTTCGCA TTTGGCGCCG CGCCGGGAAG
TGGTACGCCT GCTTCGCCTG TGAGACGGAA GCGACTCCGC TGCCAGCGAC CGGGCGCGAG
ATTGGCGTGG ACGTAGGCAT TGCGAGTCTG ATCACCACAA GCGAAGGCGC GAAAGAGCCG
CACCCCGGCT GGTATCGCGC CGCACAGCGC ATGCTACGCG TGCGGCAGCG ATGCGTCGCC
CGCCAGAAGA AGGGAAGCGC GTCCCGGCGC AAGGCCGTGC TGGCGCTGCA GCGCCAGCAC
GAGCGGATCG CCAACGCCCG CAAGGACTAT CTGAAAAAGC TAGCGCACCG GCTCATCACG
CAGTACGACC GGATCGCGCT TGAAGACCTC CGCATCACGA ACATGGTGCG GAACCGACGC
ATGGCAAAGA GTATTCTGGA CGCCGGATGG GGCTGCTTCG TTCGGCGCCT CACGAGCAAA
GCGGCTGAGG CTGGCCGTGT GGTGCTGTTG GTGGACCCGA GGAATACGTC CAAGACCTGT
AGCCGATGCG GGCATATCTT CGCGACGCTT TCGCTGTCGG ATCGGCGGAT TGATTGCGGC
TGCCGACTAT CACTCGATAG AGACCACAAC GCCGCAGTGA ACATCCTAAA ACGGGCTGGA
CAAGCCCGTT GGGGCGTAAG CGGGTCACTG GACTCGTTGC CCCAAGAAGC CGCGCCACTT
TAG
 
Protein sequence
MLKTFVYRLY PSKPQARRLD STLETCRRWY NQCLAERRDA YQQRGETAGK FAQLAKVKEY 
KALNPHAKGI HSHVLQVVVS DLDKAFQAFF RRVKAGETPG YPRFRGRNRF DSFGFKEYGN
GFKADGRRLR LSGIGRVAVR WNRPLEGQIK TVRIWRRAGK WYACFACETE ATPLPATGRE
IGVDVGIASL ITTSEGAKEP HPGWYRAAQR MLRVRQRCVA RQKKGSASRR KAVLALQRQH
ERIANARKDY LKKLAHRLIT QYDRIALEDL RITNMVRNRR MAKSILDAGW GCFVRRLTSK
AAEAGRVVLL VDPRNTSKTC SRCGHIFATL SLSDRRIDCG CRLSLDRDHN AAVNILKRAG
QARWGVSGSL DSLPQEAAPL