Gene Rcas_2065 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2065 
Symbol 
ID5539545 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2648567 
End bp2649955 
Gene Length1389 bp 
Protein Length462 aa 
Translation table11 
GC content62% 
IMG OID640894200 
Productcyclic nucleotide-binding protein 
Protein accessionYP_001432169 
Protein GI156742040 
COG category[T] Signal transduction mechanisms
[R] General function prediction only 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCTGT ATACGATTGA GGATCAAACA ATCTATCTCG AAGAGACCGG TCCTGAGAAT 
GCGCCATGTG CGTTTCTCGT CCATGGCTGG GCGAGTTCGT CGTACACCTG GAAACCGCTC
CTGCCTGCAC TGAGTCGCCG GTATCGTTGT GTTGCCATTG ATCTTCCGGG GTTTGGTCAG
TCGCCGGCGC CATCACATCC GCCGACGATT GCGGGGTACG CCGATCTTGT GGCGTGTCTG
ATCGAGTATT TCAGCCCTCG TCAACCGGTG TTGCTCCTCG GTCATTCGAT GGGCGGGCAG
ATTGGCGCCA CGCTGGCGCT GCGCTATCCA ATGCTCGTTG AGCGCATGGT GCTGCTCAAC
CCGGCGTTGA GCGGGCGTCT CTCGACCCGG GTGAATCTGC TGATCGGGCC CCATGTGCTG
GCGGAGCGTT TTTTGCCGCT CGAATGGTTG TTGCACCTGC TCGCAAAAAC GCCGCTCGAC
TACACCGATT ATCTGCTCAA GCCGTCGAAT TTTGCCGAAC GGGCGCGGGT ATCCGAGGAG
GATTATCAGC GCATCCGCGC CGATGCGCGC CGTCCCGGTC AGGGGCGTAT ACGCGCTGCT
TGTTTTCAGG CAATGCGCCA GAGCGATCTG CGCGGTCGGC TTGCAGCGCT CGAACCGCCA
ACCCTTGTTA TCTGGGGCGC GGAAGACGAT ATTGTACCGT TGCGCGATGC CGGCGCGGTC
GCTGCCGAGT GGCCCGCTGC CGATCTGCGG ATCATTCCGA ATGCCGGCCA CTGGCCCCAA
TTCGAGCAGC CGGATGCGAC GTTGCGCCAC ATTGCGCTCT TTCTTGGCTT GCCGCCTGCG
GGTGTCGCGC CATCTGCCGA CGCGCGCGAC ATCGCTGAAC TGCACGCTAC AGCACAGTTT
CTCAACAATT CAGAGATCGG TGGACGTCTG AACGAAGCGC AGCGTATGCG TATCGCGTCG
CTGTTGCAGC GGCGTGTGCT GATGCCGCGT GAACGCCTGA CTGCTGCTGG CGCGCGCGGT
GATGAGATGT ATATTGTGCA GGACGGATTG CTCGAAGTCT GGCTTGAACC TGTGCCGGTC
GGCGGGGTAC GACAGCCGCC GGTGCGGATC GCCTTCATGC AGAGCGGGCA AGTCGCCGGA
GAATTGGGAT TGCTCGAAGA TGTGGAACGG AGCGCCGATC TGCGCGCGGG CGATCAACCA
ACGGTGGTGC TGGTGTTGAC GCGCGAGGCG CTGAATACGC TGGCGGAAGA CGATCCAGCA
TTGGGAATGC GCCTGATGCA GAATCTGGCA GTATCATTGG GGCGTCGCCT GCGCCACCAG
AACTGGCTTG CGCAGCGCCT CGAACAGCGC GCATGGCAGG GGGGCAGTGT GACGCGGTTA
CTGGAGTGA
 
Protein sequence
MALYTIEDQT IYLEETGPEN APCAFLVHGW ASSSYTWKPL LPALSRRYRC VAIDLPGFGQ 
SPAPSHPPTI AGYADLVACL IEYFSPRQPV LLLGHSMGGQ IGATLALRYP MLVERMVLLN
PALSGRLSTR VNLLIGPHVL AERFLPLEWL LHLLAKTPLD YTDYLLKPSN FAERARVSEE
DYQRIRADAR RPGQGRIRAA CFQAMRQSDL RGRLAALEPP TLVIWGAEDD IVPLRDAGAV
AAEWPAADLR IIPNAGHWPQ FEQPDATLRH IALFLGLPPA GVAPSADARD IAELHATAQF
LNNSEIGGRL NEAQRMRIAS LLQRRVLMPR ERLTAAGARG DEMYIVQDGL LEVWLEPVPV
GGVRQPPVRI AFMQSGQVAG ELGLLEDVER SADLRAGDQP TVVLVLTREA LNTLAEDDPA
LGMRLMQNLA VSLGRRLRHQ NWLAQRLEQR AWQGGSVTRL LE