| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1998 |
|---|
| Symbol | |
|---|
| ID | 5539476 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 2565164 |
|---|
| End bp | 2566609 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640894133 |
|---|
| Product | alpha amylase catalytic region |
|---|
| Protein accession | YP_001432104 |
|---|
| Protein GI | 156741975 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.722533 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.515841 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATCC ACACGCCCGA CTGGGTCAAG CACGCAGTTT TCTATCAGAT TTTTCCTGAC
CGTTTCGCCA AAAGCGAGCG GGTTGCCAAA CCTAACCACC TCCAGCCGTG GGATAGCCTG
CCAACGCCAG AAGGGTACAA AGGAGGCGAT CTTCTGGGAG TGATCGAACG ATTGGACTAC
TTGCAAGACC TGGGGATCAC CGCGATCTAC TTTACGCCGA TTTTCCAATC GGCATCGAAC
CATCGCTACC ACACCCACGA CTACTACCAG GTCGATCCGA TGCTCGGCGG CAACGAAGCG
TTTCGTGCGC TGCTGGAAGC CTGCCACCGG CGTGGGATGC GTGTCGTGCT CGATGGTGTG
TTCAACCACG CCAGTCGCGG CTTTTTCCAG TTCCACGACA TTCTTGAGAA TGGACCGTTT
TCCGCTTACC TGGATTGGTT CTTCATTGAG GGATGGCCCC TCAGCCCCTA CGATGGATCA
CGCCCGGCAA ACTATCGCGG TTGGTTCAAC AACCGGGCGT TGCCGAAGTT TAATACCGAC
AACCCACAGG TGCGCGAATT TCTGATGCGC GTCGCCGAAC ACTGGATCCG CCAGGGCATC
GACGGTTGGC GCCTCGATGT GCCGTTCGAG ATTACGACCG AGGGATTCTG GCAGGAGTTT
CGCCAGCGTG TGAAGGCGAT CAACCCCGAA GCGTACATTG TCGGTGAGGT ATGGCGCGAT
GCGCGCCGGT GGTTGCAGGG CGACCAGTTC GATGGCGTGA TGAACTACCT GTTCACCGGA
CCGACGATTG CGTATGTCGC CGGTCCGCGC GTCGATCCGG CGCAGGTCGT GGGGCGGGAT
TATGTCACCA TGCCGCCGTT GACGGCAGCG GAGTATGCGC GTGTGATCGG CGATGTGCTG
AGCCGGTACG ATTGGGAGGT CCAGTTGACC CAGTTGAACC TGTTCGATAG CCACGACACG
GCGCGCCTGC TGACGATTGC GCGCGGCGAC CGCAGCAGCG TGCGCCTGGC GACGATCCTG
CTCATGACGT TCCCTGGCGC GCCGTCGGTA TTCTACGGCG ACGAAATCGG ACTGCCCGGC
GGCGTCGATC CCGACGCGCG CCGCGCGATG CCATGGGATC GACCGGAGAC GTGGGATATG
GAGACGCTGG CGTACCACAA ACAGTTGATC GCTCTGCGCC ATGCGCTCCC GGCGCTGCGC
ACCGGTGCAT TCCACGTCCT GTACGCCGAC GATGAGGTCT TCGCCTTTGC ACGCAAACTG
AACGACCAGA TCGTGATCGT GGCGGTCAAC AACGACGAAC AGCCACGGCA GGTCGCCATT
CCGGTCGCCG ACCTTTTGTC CGACGGTCGT GAGATGATCG CCCGCTATGG GAACTATCAC
AACCGGATTG TTCATGGTAC ACTTCATGTA TCTGTGCCGG CTCGCGACGG GCTGATCCTG
ACATGA
|
|---|
| Protein sequence | MTIHTPDWVK HAVFYQIFPD RFAKSERVAK PNHLQPWDSL PTPEGYKGGD LLGVIERLDY
LQDLGITAIY FTPIFQSASN HRYHTHDYYQ VDPMLGGNEA FRALLEACHR RGMRVVLDGV
FNHASRGFFQ FHDILENGPF SAYLDWFFIE GWPLSPYDGS RPANYRGWFN NRALPKFNTD
NPQVREFLMR VAEHWIRQGI DGWRLDVPFE ITTEGFWQEF RQRVKAINPE AYIVGEVWRD
ARRWLQGDQF DGVMNYLFTG PTIAYVAGPR VDPAQVVGRD YVTMPPLTAA EYARVIGDVL
SRYDWEVQLT QLNLFDSHDT ARLLTIARGD RSSVRLATIL LMTFPGAPSV FYGDEIGLPG
GVDPDARRAM PWDRPETWDM ETLAYHKQLI ALRHALPALR TGAFHVLYAD DEVFAFARKL
NDQIVIVAVN NDEQPRQVAI PVADLLSDGR EMIARYGNYH NRIVHGTLHV SVPARDGLIL
T
|
|---|
| |