| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1940 |
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| Symbol | |
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| ID | 5539418 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2484444 |
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| End bp | 2484830 |
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| Gene Length | 387 bp |
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| Protein Length | 128 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640894076 |
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| Product | putative endoribonuclease L-PSP |
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| Protein accession | YP_001432047 |
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| Protein GI | 156741918 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
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| TIGRFAM ID | [TIGR00004] endoribonuclease L-PSP, putative |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.049388 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000582392 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGATCGTA CAGTCGTACA AACACCAGAT GCGCCGCAGG CGATTGGTCC ATACTCACAG
GCGATCATTG CTGACGGCTT CGTGTTTTGC TCGGGGCAGA TTCCGCTGAC TCCCGACGGC
GTTCTGGTCG AAGGGGACGT GGCGGTGCAG ACGCGCCAGG TGTTGGCAAA CCTTCAGGCA
GTGCTCACAG CCGCAGGCAG TTCGCTCGAT CAAGTGGTCA AAACGACGGT TTTCCTTGCC
GATATGAGCG ACTTCGCCGC CATGAATGCT GTCTATGCCG AATTCTTCGC CACTAATCCG
CCAGCGCGTT CGACGATCCA GGTCGCGCGG TTGCCACGCG ATGCGCGGGT GGAGATCGAA
GCGATTGCGT TGAGGCGTTC GCCATGA
|
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| Protein sequence | MDRTVVQTPD APQAIGPYSQ AIIADGFVFC SGQIPLTPDG VLVEGDVAVQ TRQVLANLQA
VLTAAGSSLD QVVKTTVFLA DMSDFAAMNA VYAEFFATNP PARSTIQVAR LPRDARVEIE
AIALRRSP
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