| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1887 |
|---|
| Symbol | |
|---|
| ID | 5539365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 2425189 |
|---|
| End bp | 2427612 |
|---|
| Gene Length | 2424 bp |
|---|
| Protein Length | 807 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640894024 |
|---|
| Product | 3-hydroxyacyl-CoA dehydrogenase NAD-binding |
|---|
| Protein accession | YP_001431995 |
|---|
| Protein GI | 156741866 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.638479 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00718555 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGA TCAAGAAAGT GGCCGTCATT GGCGCCGGTA CGATGGGCGG CGGCATTGCC
GCTCACTGCA TCAACGCCGG GTTGCAGGTC GTGCTGCTCG ATACGGTTCC CTCCAGCCTG
ACACCCGATG AGGAACAGCG CGGTCTGACG CTTGCGTCGA AGGAGGTGCG CAACCGCTTC
GTCAAAGCCG GCCTGGAACG GATCAAGAAT GCCCGACCGG CGGCGCTGTT CGATCCGCAG
TCGATTGCGA AAATCGTGAT CGGCAATGTG GAGGACGACC TGGCGTTGAT TGCCGATGCC
GACTGGATCG TTGAGGCGAT CATCGAGCAG CTCGAACCAA AACGCGCCTT GATGGAAAAG
ATCGAGCAGG TGCGCAAACC GGGCAGTATT GTGTCGTCCA ATACATCTGG CATCCCGATT
GCTGCCATCG CCGCCGGGCG CTCTGAGGAT TTCCGCCGCC ATTTCCTCGG AACGCACTTC
TTCAATCCGC CACGCTATCT CTACCTGCTC GAAGTCATTC CAACTCCCGA CACCGATCCC
GATGTCGTGG CAACCATCAG TCGCTTCGCC GATGTGACCC TCGGCAAGGG TGTGGTGGTC
TGCAAGGATC GCCCCAACTT CATCGGCAAC CGTATCTTTA GCTACGATAT CGCTACGACG
GTCGGGTACG CGCTGCGGAA CGGCTATACG GTCGAGGAGG TCGATAGCCT GACCGGTGAG
CTGATCGGCA GACCCAAGAC AGCGACCTTC CGCCTGCTCG ACCTGGTCGG CATCGATGTG
ATGCTCCACG TGCAACGCAA TCTCTATGAG GCGCTGCCCG ACGATGAAGA GCGCGAGGCG
CTGAAGATTG CGCCCGAAAT CGAGGCGCTG GCGGCAAAGG GCTGGCTCGG CAACAAGAGC
GGCGTCGGTT TCTATAAAGA AGTGAAGGGC GCTTCCGGGC GCGAGTTCTG GCATCTCAAC
CTTCAGACGA TGGAGCACGA GCCACCCAAA AAGCCACGCT TCGACCTCGT CGGCAAGGCG
CGCAAGATCG AGAACCTCCC TGAACGACTG CGCTTCCTGA TCGATAATGC CGACACGGAT
CGCGCCGGCG TCTTCATCCG TGAGACGATG CTGCGCACGC TGGCGTATGC CGCGCGCCGC
ATCCCGGAGA TTTCCGACAG TATTGTGGAT ATCGACCGCG CTATGCGCTG GGGGTTCAGT
CATCAACTTG GTCCGTTCGA GGTGTGGGAC ACGCTGGGGG TGCGCAAAAC CGCCGAACGC
ATGCGTGAAC GCGATATTGC CATTGCGCCA TGGGTCGAGG AGATGCTGGC GAAAGGCGGC
GAGAGTTTCT ATCAGCGCGA CAACGGGCGG GTCGTCGGTG TCTGGAATCC CATCGAATCA
CGTTATGTCG AATACACGCC ACCAGAAGGA GTGCTGTCGC TCGACGATCT GCGCGCGCAG
GGCAGGGAAG TCGCACGCAA TCATAGCGCC TCGCTGATCG ATCTGGGGGA TGGCGTGCTC
TGCTTTGAGT TCCACGCGAA GGTCAACGCT ATCGATCCGC TGATCACCGA GATGGGCTGG
AAGGCGCTCG AACTGCTCCA GGAAGATCGC TGGGTCGGCA TGGTTATCGG CAATCAGTCG
TCCGACTTTT GCGCCGGGGT CAACCTGGGG GTGGTGCTGA TGGGAGTGAT GGGCGGCAAG
CCGGAGGAGT CGGCGAAATT CGCCAAAGGC ACCCAAGACC TGTTCTTCCA TTTCCGCACC
TGTCCAAAGC CGATTGTCGC CGCGCCATAT GGCCGTGTGC TCGGTGGCGG CGTCGAGGTC
TGCCTGGCGG CGGCGCGACG GGTGGCAGCC GCCGAAACAT ATATGGGTCT GGTGGAACTC
GGAGTTGGGC TGATCCCGGC GTGGGGCGGC TGCAAGGAGT TCGTCCGCCG ACACGTTTCG
CCACACGTCA AGACTCCCGG CGCCGATCCG CTCCCCTACC TGCAACAGGC ATTCGAGACA
ATCGCAATGG CGAAGGTCAG CGAACTTGGC GCGGTTCAGG CAAAGCAACT CGGCTACCTG
ATGGACGACG ACAGGATTGT GATGAACCGC GAGCGCCTTG TTGCCGAAGC CAAAAAAGAA
GTGTTGCTGA TGGTCGCCGA GGGGTACACG CCGGTTCCGC CGGAGGGCGA GCCGGTGTAC
GCCATCGGTC GGCGCGGCAT TGCCGCCGTG AACGCGATGG TTTATGGCAT GCGCCAGGGC
GGCTACATCA GCGACTACGA CATGACATTG GCGCGCTCGC TGGCATATGT GATGTGCGGC
GGCGACCTGA CGCAGCCGCA GTGGGTCACC GAGCAGTACT TCCTTGATCT GGAATTCGAG
CAGGCGAGCC AATTGATCCA GCAACCGAAG ACGCAGGAGC GGATCATGGC AATCCTGCAA
ACCGGTAAGC CGTTGCGGAA TTAG
|
|---|
| Protein sequence | MTQIKKVAVI GAGTMGGGIA AHCINAGLQV VLLDTVPSSL TPDEEQRGLT LASKEVRNRF
VKAGLERIKN ARPAALFDPQ SIAKIVIGNV EDDLALIADA DWIVEAIIEQ LEPKRALMEK
IEQVRKPGSI VSSNTSGIPI AAIAAGRSED FRRHFLGTHF FNPPRYLYLL EVIPTPDTDP
DVVATISRFA DVTLGKGVVV CKDRPNFIGN RIFSYDIATT VGYALRNGYT VEEVDSLTGE
LIGRPKTATF RLLDLVGIDV MLHVQRNLYE ALPDDEEREA LKIAPEIEAL AAKGWLGNKS
GVGFYKEVKG ASGREFWHLN LQTMEHEPPK KPRFDLVGKA RKIENLPERL RFLIDNADTD
RAGVFIRETM LRTLAYAARR IPEISDSIVD IDRAMRWGFS HQLGPFEVWD TLGVRKTAER
MRERDIAIAP WVEEMLAKGG ESFYQRDNGR VVGVWNPIES RYVEYTPPEG VLSLDDLRAQ
GREVARNHSA SLIDLGDGVL CFEFHAKVNA IDPLITEMGW KALELLQEDR WVGMVIGNQS
SDFCAGVNLG VVLMGVMGGK PEESAKFAKG TQDLFFHFRT CPKPIVAAPY GRVLGGGVEV
CLAAARRVAA AETYMGLVEL GVGLIPAWGG CKEFVRRHVS PHVKTPGADP LPYLQQAFET
IAMAKVSELG AVQAKQLGYL MDDDRIVMNR ERLVAEAKKE VLLMVAEGYT PVPPEGEPVY
AIGRRGIAAV NAMVYGMRQG GYISDYDMTL ARSLAYVMCG GDLTQPQWVT EQYFLDLEFE
QASQLIQQPK TQERIMAILQ TGKPLRN
|
|---|
| |