Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1867 |
Symbol | |
ID | 5539345 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 2386418 |
End bp | 2387914 |
Gene Length | 1497 bp |
Protein Length | 498 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640894005 |
Product | pyridoxal-dependent decarboxylase |
Protein accession | YP_001431976 |
Protein GI | 156741847 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGGAC TCCAATTCCA TCAGGCGTTT GCGTCGGCTG GCAGGCGCGC AGTTGCCGCA TTCGAGGCGA TCCTGCATCG TATTCCGGCG GTGCAGCGCC GGCTCGAAGC GCGGTATGAG GCACTGCTTG CCGACATCGA ACCGTCGCTC AAGCCATACC GCAACGAACT GCCTGCCATC ACTCGCTTGC CAACCATCGG GCGCAGCCGC GACGAGATTC TGGACGAGAT GCGTCGTTTG GCGGAACGCG AGACCCCGCG CTGGCGTGAG GGGTATGTGT CAGGCGCCGT CTACCACGGC GATCCCGACC ATCAGGCGTT TTTGAGCCAG GCATATGCGC TCCATGCGGC GAGCAACCCG CTCCACGTCG ATCTCTGGCC CAGCATCGCC AGATACGAAT CTGAGATTGT TGCTATGACC GCGTCGATGC TCGGTGGCGC CTCCGGCGTT TGCGGCACAG TCACCTCTGG CGGCACCGAG AGCATTCTGC TGGCGATGAA GACTTACCGT GACTGGGCGC GCGAGCGGCG CGGCATCCGT CGTCCTGAAG TGGTTGTTCC ACATACTGCG CATGCTGCGT TCGACAAAGC GGCACACTAT TTCGGCATCC GGTTGGTGCG CATTCCGGTG GATGCCGGCT TTCGCGCCGA TGTGTCGGCT GTGCGACGCG CCATCAGCCA TAATACGATT GCGCTGGTTG GATCGGCGCC CTCATTCCCG CACGGCGTCA TCGATCCCAT CGCCGACATA GCGGCGCTGG CGAGGGAGCG GCGCATTGGC ATGCACGTCG ATGCCTGTCT CGGCGGATTT GTGCTTCCCT GGGCGCGTCG GCTCGGCTAC CCCGTTCCGC CGTTCGACTT CAGCGTTCCC GGTGTCACCT CGATCTCAGT GGATACCCAC AAGTACGGGT ATGCTGCCAA GGGAACCTCT GTTGTCCTCT ACCGCACCGA AGCGCTGCGC CGCTACCAGT ACTACGTTGC TGCCGACTGG CCCGGCGGGT TGTACGTTTC GCCAACGATG GCAGGCAGCC GCCCCGGCGG GCTGAGCGCT GCCGCATGGG CTGCCATGGT CAGCATTGGC GAGCAGGGGT ATCTGGAGGC GACCCGCCGC ATCCTGGAGA CTGCGCGCCG GATCCGCTGC GGCATCGAGT CCATTCCAGA GTTGCGCGTC CTCGGCGACC CGCTATGGGT GATCGCGTTC GCTTCAATGC GTCTCGATAT CTATCGTGTG CTCGATCAGA TGGCGCAGCG CGGCTGGAAC CTCAACGGGC TGCATCACCC ACCTGCTATC CACATCTGCG TTACCTTGCT GCACACGCAG CCTGGCGTCG CCGATCGTTT CATCGCCGAC CTGCGCGATG CAGTTGCCGC CGTGCGCCGC GAGCCGCGCG CCAGAGGCGG AATGGCGCCG GTGTACGGTA TGGCTGCATC GCTGCCGTTC CGCAGCGTCG TCAGTGATCT GTTGCGGCGA TACCTGGATG CGGTGTATCG GGTGTAA
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Protein sequence | MRGLQFHQAF ASAGRRAVAA FEAILHRIPA VQRRLEARYE ALLADIEPSL KPYRNELPAI TRLPTIGRSR DEILDEMRRL AERETPRWRE GYVSGAVYHG DPDHQAFLSQ AYALHAASNP LHVDLWPSIA RYESEIVAMT ASMLGGASGV CGTVTSGGTE SILLAMKTYR DWARERRGIR RPEVVVPHTA HAAFDKAAHY FGIRLVRIPV DAGFRADVSA VRRAISHNTI ALVGSAPSFP HGVIDPIADI AALARERRIG MHVDACLGGF VLPWARRLGY PVPPFDFSVP GVTSISVDTH KYGYAAKGTS VVLYRTEALR RYQYYVAADW PGGLYVSPTM AGSRPGGLSA AAWAAMVSIG EQGYLEATRR ILETARRIRC GIESIPELRV LGDPLWVIAF ASMRLDIYRV LDQMAQRGWN LNGLHHPPAI HICVTLLHTQ PGVADRFIAD LRDAVAAVRR EPRARGGMAP VYGMAASLPF RSVVSDLLRR YLDAVYRV
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