Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1859 |
Symbol | |
ID | 5539337 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 2374967 |
End bp | 2376616 |
Gene Length | 1650 bp |
Protein Length | 549 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640893997 |
Product | amidohydrolase 3 |
Protein accession | YP_001431968 |
Protein GI | 156741839 |
COG category | [R] General function prediction only |
COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.909827 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGATAT GTAAGTCCTT CCAGCACCAT TCAGAGGCCA TGATCCCAGA CACCATCCTC TCCGGGGCAA CAATTTATCC GATGGTCACC GCACCAATGA CGTGCGGCGC CATCGCCATT GGCGGCGACC GCATTCTTGC AGCAGGACCG GCGGACGACA TCGAGGCGCT TGCGGGAGCA TCGACGCGCA CGGTGCGTCT GCCGTCCGAA TACGCTGTCA TTCCGGCGTT TCACGATTCG CATCAGCACC TGTTGAGTTA TGTGCGCAGC CGCACCCGCG TGGCGCTATG GGATACGACG AGCATCGCTG CGCTGCTGGA ACGGCTGCGC GCGGAAGCGA TGCGACGACC GCCGGGGGAA TGGATCGTCG CTGTGGGACA TGACCAGGGG CGACTGACGG AACGCCGCCA TCCGACACGC GCAGAACTCG ACGCTGCCGT TCCCGGTCAT CCGCTCCTGA TCTATCGCGC CTGCAATCAT GTGGCGCTGG CGAATTCTGT TGCACTGACG CGCGCCGGCA TCACTGCCGC CACGCCCGAC CCGCCAGGCG GCCGAATCGA GCGCGACAGT GATGGAAGTC CAACCGGCGT GCTGCTCGAA GCGGCAATGG CGCTGGCAAT GCATGTGGTC GAAGCGCCTT CCATCGATTG GCACGCCGGC GTGCGGGATG CAGCACGAGA GTACCACAAA CGCGGCATCG TTGCGATTGG GGAAGCGGCG CTCGGGCATA TCGCCGGTCT GCATGATCTG AAGATCGTGA ACGACCTCAT CCGCGATGGT GGTACGGGGC TACGCATGTA TGCACTGGCA TACGGCGCCG TGGCAGAAGC GATGCTCCAG GCGGCGGAAG CGGGCGAGTC GCAGGAGGCC TGGCGCAACG ACGCCTGGTT GCGTTTCGGG GCGATCAAGT ATTTCGCCGA CGGGACACTC GGCGGCGGGA CGGCGTGGCT CAGCGAGGGA TATGGCGATG AGCCGGGCAA CTCTGGTTTT CCACTCGTGC CAGCAGAAGA ACTCGATGCG CGGGTGTTGC GCGCGCATCG CGCCGGATTC CAGGTTGCCA TCCACGCCAT TGGCGATGCA GCCGTGGCAA TGGCGCTCGA TGCGTATGAA CGCGCACTTA CCGCATATCC GCGCGCCAAT CATCGTCACC GCATCGAGCA CGTCGAAGTT GTGCATGCCG GGTTGCCGGA GCGCTTCGCG CGCCTGGAGG TGATCGCCGC CATTCAGTCG TGCTTCACCT GGTGGGAAGA AGGCGACGTG ACCAGGTTAG GACCCGGGCT GGCGCCGTGG GGGCACGCCT GGGGCGCCTT GCAACGCGCC GGGGTCATCC TCGCCAATGG ATCAGATAAC CCGGTGTTGC CAGATTTCGC GCCCCTCCAG GGGATTGCGG CGGCAGTGAC GCGCAAGGCG CACAATGGTC GCACAATCGC CGCACATCAG GCAATCGGTT TGATGGATGC GTTACGTAGT TACACCTGGG GCAGTGCGTA TGCCGCCTTC GCCGAGCATG AGCAGGGCGC GCTGGCGCCG GGCATGTACG CCGATATTGC CGTGCTCGAT GGCGATCCGC TAACTGTTGA ACCTGAGCGC ATACCGGAAA TTTCCGTCGT CATGACCATT GCTGGCGGGA AGATTATGTA CGAACAATGA
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Protein sequence | MTICKSFQHH SEAMIPDTIL SGATIYPMVT APMTCGAIAI GGDRILAAGP ADDIEALAGA STRTVRLPSE YAVIPAFHDS HQHLLSYVRS RTRVALWDTT SIAALLERLR AEAMRRPPGE WIVAVGHDQG RLTERRHPTR AELDAAVPGH PLLIYRACNH VALANSVALT RAGITAATPD PPGGRIERDS DGSPTGVLLE AAMALAMHVV EAPSIDWHAG VRDAAREYHK RGIVAIGEAA LGHIAGLHDL KIVNDLIRDG GTGLRMYALA YGAVAEAMLQ AAEAGESQEA WRNDAWLRFG AIKYFADGTL GGGTAWLSEG YGDEPGNSGF PLVPAEELDA RVLRAHRAGF QVAIHAIGDA AVAMALDAYE RALTAYPRAN HRHRIEHVEV VHAGLPERFA RLEVIAAIQS CFTWWEEGDV TRLGPGLAPW GHAWGALQRA GVILANGSDN PVLPDFAPLQ GIAAAVTRKA HNGRTIAAHQ AIGLMDALRS YTWGSAYAAF AEHEQGALAP GMYADIAVLD GDPLTVEPER IPEISVVMTI AGGKIMYEQ
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