Gene Rcas_1857 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1857 
Symbol 
ID5539335 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2371496 
End bp2372104 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content59% 
IMG OID640893995 
Producthypothetical protein 
Protein accessionYP_001431966 
Protein GI156741837 
COG category[S] Function unknown 
COG ID[COG4636] Uncharacterized protein conserved in cyanobacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.39074 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAATCG TGCATGCCGG TCCTGATCGC GTGCTGCGAT CGCTGCGCGC CGACTGGAGC 
CGTGAGCGCT GGGAACAGCT TCCCAATGAC GGCAATCGCT ATGAGGTGAT CGATGGGATT
CTGTATATGA CGACCGCGCC CAGCGCATTT CACCAGTGGA TTGTTCGCCA GATTGTGCGC
GCGCTCTTTG CTCAGATTGA CGATCTAAAC CTCGGCGTCA CCCTGTGGGC GCCGATCGGG
GTTTTTATGC CCGGCTGTGA TCCGGTGCAG CCGGATATTC TTGTTGTTCA GACGGCGCAC
CTGGGCATCA TCCATGATCG GCGCATCTAT GGCGTGCCAG ACCTCATCGT GGAGGTTGTT
TCGCCATCGA ACTCTGAGCA GGACCTTGAT ATTAAGCGCA AAGCATATGC GCGCGCAGCC
GTGCCGGAAT ACTGGATTGT TCGCCCTGCC GAACGCGATG CGCTGGTGTG CAGCGAGCCA
GACCCTGTGG CTGAACTTTT CCAGACCGTC GATACCATTC CGCCAACCGG AGTCCTGGCT
TCCCCAACGT TGCCGATCCA GGCGAGCATT GCCGATTTCT TCGCCAACGC CCCCGATGCT
ACGCTCTAA
 
Protein sequence
MTIVHAGPDR VLRSLRADWS RERWEQLPND GNRYEVIDGI LYMTTAPSAF HQWIVRQIVR 
ALFAQIDDLN LGVTLWAPIG VFMPGCDPVQ PDILVVQTAH LGIIHDRRIY GVPDLIVEVV
SPSNSEQDLD IKRKAYARAA VPEYWIVRPA ERDALVCSEP DPVAELFQTV DTIPPTGVLA
SPTLPIQASI ADFFANAPDA TL