| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1794 |
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| Symbol | |
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| ID | 5539272 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2304555 |
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| End bp | 2305316 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640893933 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001431904 |
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| Protein GI | 156741775 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00870136 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTACGT TGAATGAGAA GACAGCATTC ATTACCGGTG GCGGGCGCGG GATTGGCCGG
GCGATTGCGT TGACGTTCGC CGGCGCCGGT GCGGCGGTGG CTGTTGCCGG GCGCAATCGG
GAGGCGCTTG ACGAGGTGTG CGCTATCATT GAGCAGCGTG GTGGGCGTGC GGTTGCCGTC
ACATGCGATG TCGCCGATGC AATGCAGGTC TACACCGCCG TCAGTACGGC GCGCGCGGCG
CTTGGTCCGT TTGATATTCT GGTGAACAAC GCGGGGGTCA CCTATAGCGC CAAGTTAACC
GATACCGATG ATGCGCTCTG GGAGCGAGTC ATTCAGGTGA ATCTCAACGG GGCATATTAT
TGCTGCAAGG CGATTGTTCC CGATATGATC GCGCGCGGCG GCGGGCGGAT CATTAATATC
GCATCGATGG CATCGCTCGT TGGGATGCCC TTCTCGGCGG CGTATAGCGC TGCGAAGCAC
GGTCTGCTTG GTCTGACGCG CTCGCTGGCG CTCGAGCTGC AACGGTACCA TATTACGTCG
AATGCTATCT GCCCTGCCTG GGTTGACACC GATATGATGG CGGAGGCGAT CAATGCGTTG
GCGGCGAAGA CCGGTCGCAC GCCGGAAGAG GCGCGTGAGG CGTTGCTGTC GCGCGGCGGT
CAGCAACGCG CTATGTCGCC GGAGGAGGTC GCCATTGCTG CGTTGCGCCT CGCCGGTCCC
GATGGCGCCG TTACCAATGG CGAAGCGATT GTGCTTCATT AA
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| Protein sequence | MSTLNEKTAF ITGGGRGIGR AIALTFAGAG AAVAVAGRNR EALDEVCAII EQRGGRAVAV
TCDVADAMQV YTAVSTARAA LGPFDILVNN AGVTYSAKLT DTDDALWERV IQVNLNGAYY
CCKAIVPDMI ARGGGRIINI ASMASLVGMP FSAAYSAAKH GLLGLTRSLA LELQRYHITS
NAICPAWVDT DMMAEAINAL AAKTGRTPEE AREALLSRGG QQRAMSPEEV AIAALRLAGP
DGAVTNGEAI VLH
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