Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1784 |
Symbol | |
ID | 5539262 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 2289415 |
End bp | 2291187 |
Gene Length | 1773 bp |
Protein Length | 590 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640893923 |
Product | AMP-dependent synthetase and ligase |
Protein accession | YP_001431894 |
Protein GI | 156741765 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.682843 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAACA GTGTGGATCG ACCCTGGTTT GCGAGTTATG AGCCGAATGT GCCGCGTTCT GTCGAAATCC CCAACGTCAC GCTGAACTAC TTTTTGGCGG AGAGTACGCG AAAGTACCCG TACAACACAG CGACCAATTT TGTGTTGAGC TACCTGGCGC GCGGTCTGTA CACCGTCGGT GGCAAGATGA CCTACCAGAA GCTCAACGAA ATGGTCGATC GCTTTGCCAA TGCGCTCTAT CAACTGGGGG TGCGCAAGGG CGATCGCGTC GCGTTGATGC TGCCCAATTC GCCACACTAT GTGATTGCGT TCTTTGCGTC AATGCGCATT GGCGCGATTG TCGTCAATAA CAATCCAACG TACACTGCGC GTGAACTGAA GCATCAACTG GTCGATAGCG GCTCTGAGAC GATTGTGCTG CTGAACCTGT TCTATCCGCG GTTGCAGGAA ATCCGTGCTG AAACGCCGCT CAAGCGCGTG ATTGTGGCGC ATATCTACGA TACGCTTGGT CCGCTGTCGC GCTTCCTGGT GCATGCCAAA CAGAGCAAAC AGCCCGATTG GGTCGATGTC TCGCACGACT CGAGCGTCTA TCTGTTCCAG CATTTGCTCG AACGCTATGG ACCCAATCCG CCAACGGTCG ATGTGCAACC CGAGGACGTT GCGCTGTTCC AGTATACCGG CGGGACGACC GGTTTGCCGA AGGCGGCGAT GCTCACCCAT CGCAATCTGG TGGCAAATAC CGTCCAGGTG GCGTCGTGGC TCACAAAGAC CGACTATGGC GCCGAGAAGA TGATGTGCGC TATTCCGTTC TTCCATGTCT ATGGCATGAC GGTCGCAATG ATCTACGGTC TTTACCTGGG TGGCGAGTTG ACGATTGTTC CCAACCCGCG CGAACTCGAT CATGTGATGG ATGTGATGCA GCGCGAGCGT TCGACCCTCT TCCCCGGTGT GCCGGCGATG TATATTCGGA TTGTCAACCA TCCGCGCATC AATGAGTATG ATTTGAAGTC GATCAAAGCC TGTATCAGCG GTTCGGCGCC GCTGCCCATC GAAGTCCAGG AGAAGTTCGG TCAGATCACC GGCGGACGCC TGGTTGAAGG CTTCGGGATG ACGGAACTCT CGCCGGTCTC GCACTGCAAC CCGGTGTTCG GTAAACGGAA GAAGGGATCG ATTGGCATTC CGCTGCCGGA TGTCGATGCG AAGATCATCG ATCTGGAAAC GGGTGAGGAT ATTCCGTTCG GGTCGGACAA GGAAGGCGAA CTGGTCGTCA AGGGTCCGAT GGTGATGAAG GGGTACTGGA ATCGTCCCGA GGAGACCGAA GCGACGTTCA CTCCCGATGG TTGGCTGCGC ACCGGGGATA TTTGCAAGGT CGATGAAGAG GGATACTTCT ACATCGTGGA CCGCAAGAAG GATATGATGA TCGCGTCGGG GTACAAGGTG TTGCCGCGCG ATGTCGAGGA AGTGCTCTTC ACCCATCCCA AGGTGCTCGA AGCCGTGGTT GTCGGCATTC CGCATCCAAC GCGCGGTGAT GACACGATTA AGGCGTTCAT CGTGCTCAAA CCAGGTGAGA GTGCAACGCC CGACGAAATT CGTGAGTTCT GCAAGCAGCA CCTCGCGCCG TATAAGGTGC CGCGTGAGGT CGAGTTCCGC GCCGAACTGC CCAAGACGAT GGTCGGCAAA GTGTTGCGGC GCGTGTTGAT CGAAGAAGAA AAGGCAAAAC TCGCGGGCGC GCCAGCGATG GAAACCGCAG GTGCGTCGTC TGCCAGAGGA TAA
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Protein sequence | MNNSVDRPWF ASYEPNVPRS VEIPNVTLNY FLAESTRKYP YNTATNFVLS YLARGLYTVG GKMTYQKLNE MVDRFANALY QLGVRKGDRV ALMLPNSPHY VIAFFASMRI GAIVVNNNPT YTARELKHQL VDSGSETIVL LNLFYPRLQE IRAETPLKRV IVAHIYDTLG PLSRFLVHAK QSKQPDWVDV SHDSSVYLFQ HLLERYGPNP PTVDVQPEDV ALFQYTGGTT GLPKAAMLTH RNLVANTVQV ASWLTKTDYG AEKMMCAIPF FHVYGMTVAM IYGLYLGGEL TIVPNPRELD HVMDVMQRER STLFPGVPAM YIRIVNHPRI NEYDLKSIKA CISGSAPLPI EVQEKFGQIT GGRLVEGFGM TELSPVSHCN PVFGKRKKGS IGIPLPDVDA KIIDLETGED IPFGSDKEGE LVVKGPMVMK GYWNRPEETE ATFTPDGWLR TGDICKVDEE GYFYIVDRKK DMMIASGYKV LPRDVEEVLF THPKVLEAVV VGIPHPTRGD DTIKAFIVLK PGESATPDEI REFCKQHLAP YKVPREVEFR AELPKTMVGK VLRRVLIEEE KAKLAGAPAM ETAGASSARG
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