Gene Rcas_1752 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1752 
Symbol 
ID5539230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2255894 
End bp2256907 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content59% 
IMG OID640893891 
Productsqualene/phytoene synthase 
Protein accessionYP_001431862 
Protein GI156741733 
COG category[I] Lipid transport and metabolism 
COG ID[COG1562] Phytoene/squalene synthetase 
TIGRFAM ID[TIGR03465] squalene synthase HpnD 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCATCGC TCCAGCATTC TGCCAGAATA CCGGTTCGAG CATTCGGTGA GCGTGAAGCG 
CCGATCCGCG ATGCTGCGGC CCTGCTCGCT AATCTGCGCC ACCTGGCTGA ACCTGATATC
ATTGGGCACG AGACGCCTTC GACCGATGCT CTGCCATCAC TGACACTCGA TGCAGCGTAT
CAGTATTGTG TCGAGGTGAC GCGCGTCAAC TCGCGCAGTT TTCACCTCAG TTCACAGCTT
CTGCCGCGCG AAAAACGACT GGCTGTTCGC GCCCTGTATG CGTTCTGCCG CGCCAGCGAT
GATACCGTAG ATCGCGCGAC CGGCGACCCG GCGCGCACGC TGGCAAATTG GGTGGCGCGC
GTCCACGCGC CACATCCGCC TGCCGATCAT CCGGTTTTGC TCGCATGGGA CGATACTGTG
CGGCGTTACG CTCTTCCGCG CGCCCTCGTG GACGAGTTGC TGGCCGGCAT TGCGATGGAT
CTCACCATCC ACCGATATGA GACGTTTGAC GATCTCTGGC TCTACTGCTA CCGTGTCGCT
TCTGTGGTCG GTTTGCTCTC GATGCACATT ATTGGGCACC GCGATGGCGC TGCGCCGTAT
GCGGTGAAAC TTGGCGTGGC GCTGCAATTG ACCAATATTT TGCGCGATGT TGGCGAAGAT
GCGCGACGCG GACGAATCTA TCTCCCGCAG GAAGACCTGC GTCGCTTTGG GTTGACGGAT
GATGATATTC TTCATGGTCG ACGCGATGAT CGCTTCCGGG CTTTGATGCG CTTCGAGATG
GAACGCGCAC ACGCCCTGTA CGATGAGTCC TGGCCCGGTA TTGCACTGCT CGATCCAGAC
GGTCGGATGG CTATTGCTGC GGCTGCGGAG ATCTATCGTG GCATTTTGCC ACGCATCGTC
GCCAACGACT ACGACGTGTT CCAGAAACGC GCCTACGTTC CATTTACCGG CAAGATCGCC
ATTCTCTGGC GCGCCTACCG CAAACTCAAT CGTCTGATCA GAGAGCATCG CTGA
 
Protein sequence
MASLQHSARI PVRAFGEREA PIRDAAALLA NLRHLAEPDI IGHETPSTDA LPSLTLDAAY 
QYCVEVTRVN SRSFHLSSQL LPREKRLAVR ALYAFCRASD DTVDRATGDP ARTLANWVAR
VHAPHPPADH PVLLAWDDTV RRYALPRALV DELLAGIAMD LTIHRYETFD DLWLYCYRVA
SVVGLLSMHI IGHRDGAAPY AVKLGVALQL TNILRDVGED ARRGRIYLPQ EDLRRFGLTD
DDILHGRRDD RFRALMRFEM ERAHALYDES WPGIALLDPD GRMAIAAAAE IYRGILPRIV
ANDYDVFQKR AYVPFTGKIA ILWRAYRKLN RLIREHR