Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1752 |
Symbol | |
ID | 5539230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 2255894 |
End bp | 2256907 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640893891 |
Product | squalene/phytoene synthase |
Protein accession | YP_001431862 |
Protein GI | 156741733 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCATCGC TCCAGCATTC TGCCAGAATA CCGGTTCGAG CATTCGGTGA GCGTGAAGCG CCGATCCGCG ATGCTGCGGC CCTGCTCGCT AATCTGCGCC ACCTGGCTGA ACCTGATATC ATTGGGCACG AGACGCCTTC GACCGATGCT CTGCCATCAC TGACACTCGA TGCAGCGTAT CAGTATTGTG TCGAGGTGAC GCGCGTCAAC TCGCGCAGTT TTCACCTCAG TTCACAGCTT CTGCCGCGCG AAAAACGACT GGCTGTTCGC GCCCTGTATG CGTTCTGCCG CGCCAGCGAT GATACCGTAG ATCGCGCGAC CGGCGACCCG GCGCGCACGC TGGCAAATTG GGTGGCGCGC GTCCACGCGC CACATCCGCC TGCCGATCAT CCGGTTTTGC TCGCATGGGA CGATACTGTG CGGCGTTACG CTCTTCCGCG CGCCCTCGTG GACGAGTTGC TGGCCGGCAT TGCGATGGAT CTCACCATCC ACCGATATGA GACGTTTGAC GATCTCTGGC TCTACTGCTA CCGTGTCGCT TCTGTGGTCG GTTTGCTCTC GATGCACATT ATTGGGCACC GCGATGGCGC TGCGCCGTAT GCGGTGAAAC TTGGCGTGGC GCTGCAATTG ACCAATATTT TGCGCGATGT TGGCGAAGAT GCGCGACGCG GACGAATCTA TCTCCCGCAG GAAGACCTGC GTCGCTTTGG GTTGACGGAT GATGATATTC TTCATGGTCG ACGCGATGAT CGCTTCCGGG CTTTGATGCG CTTCGAGATG GAACGCGCAC ACGCCCTGTA CGATGAGTCC TGGCCCGGTA TTGCACTGCT CGATCCAGAC GGTCGGATGG CTATTGCTGC GGCTGCGGAG ATCTATCGTG GCATTTTGCC ACGCATCGTC GCCAACGACT ACGACGTGTT CCAGAAACGC GCCTACGTTC CATTTACCGG CAAGATCGCC ATTCTCTGGC GCGCCTACCG CAAACTCAAT CGTCTGATCA GAGAGCATCG CTGA
|
Protein sequence | MASLQHSARI PVRAFGEREA PIRDAAALLA NLRHLAEPDI IGHETPSTDA LPSLTLDAAY QYCVEVTRVN SRSFHLSSQL LPREKRLAVR ALYAFCRASD DTVDRATGDP ARTLANWVAR VHAPHPPADH PVLLAWDDTV RRYALPRALV DELLAGIAMD LTIHRYETFD DLWLYCYRVA SVVGLLSMHI IGHRDGAAPY AVKLGVALQL TNILRDVGED ARRGRIYLPQ EDLRRFGLTD DDILHGRRDD RFRALMRFEM ERAHALYDES WPGIALLDPD GRMAIAAAAE IYRGILPRIV ANDYDVFQKR AYVPFTGKIA ILWRAYRKLN RLIREHR
|
| |