| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1727 |
|---|
| Symbol | |
|---|
| ID | 5539205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 2222609 |
|---|
| End bp | 2223475 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640893866 |
|---|
| Product | sortase family protein |
|---|
| Protein accession | YP_001431837 |
|---|
| Protein GI | 156741708 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
|---|
| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.143188 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACAACGC AATCAGACGA CGAAACCCTT CTTGAAACGC TGATCAACGC GCCGCTGCCG
CCAGCCCGAT TGTGGCAAAA GCCAGCAGTG TTGCGTTCCT TAGATGAGCA CCGTCATCAA
GCGCTGAGCG GATACCGCCT GCGCACATGG GTTGATCACT GGCTCCATCG CGCGGAACGT
TTGTTTGGCA TTGCAGCGCT TCTCATCTTT GGCTGGTGGG TTGTGGACGG ACCGGTGCGC
GACTGGTGGT ACGCGCAGCA GGTGACGCGG CACGCGCCGC CAGTTGAATC GGCTCCGCGA
CCAATGGTGG TTGTTCGTCC GCCGGCAGCG GTCGAACGTG TTATTCCTGC GGATGTGCCG
CTTCCGTTCA CAACGCCGGA TATGCGCCAG TCCCCCGCTG AAGGATTTCT GGCGCCGCGC
TCGCCGGTCG AAGCCGTGGA AGAGCAGGGG ACGCCGTTGC CTCGTCGTCT GATCATTCCC
GCGATTGGTC TCGATACGCC GGTCGTTGAA GTCTTTATCG TTGATGGCGC CTGGCAGGTC
GCTGATTATG CCGCAGGGTA TCTCCACGGC ACCGGTTTGC CCGGCGATCC CGGCAACCTG
GCGCTGGCGG GTCACGCCGG TCTGCGTGGC GCGGTCTTTC GCGATCTGGG ACGTTTGACT
CCCGGAGCGG ATATTTTCGT TGATGCCGGA ACATGGCGCT ATCAATATCG CGTTCGTGAT
ATGCGCGATG TCTGGCCCAC AGATGTCGAT GTGCTCGATC CAACGCCAAC ACCGACGATT
ACCCTGATCA CCTGCACCAA CTGGGACATC CAGCGCCTGA TTGTCATTGG TGATCTGGTC
GGAGCGCAGC CGCTGACAGG CGAATAG
|
|---|
| Protein sequence | MTTQSDDETL LETLINAPLP PARLWQKPAV LRSLDEHRHQ ALSGYRLRTW VDHWLHRAER
LFGIAALLIF GWWVVDGPVR DWWYAQQVTR HAPPVESAPR PMVVVRPPAA VERVIPADVP
LPFTTPDMRQ SPAEGFLAPR SPVEAVEEQG TPLPRRLIIP AIGLDTPVVE VFIVDGAWQV
ADYAAGYLHG TGLPGDPGNL ALAGHAGLRG AVFRDLGRLT PGADIFVDAG TWRYQYRVRD
MRDVWPTDVD VLDPTPTPTI TLITCTNWDI QRLIVIGDLV GAQPLTGE
|
|---|
| |