| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1711 |
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| Symbol | |
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| ID | 5539189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2208319 |
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| End bp | 2209275 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640893850 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001431821 |
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| Protein GI | 156741692 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4965] Flp pilus assembly protein TadB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.806697 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCGT CCGGTGTGGA ACCCGCTGTG CTGTTTGGTC TGTGTATCTT TATGCTTCTC
GTGAGCGGCT ACCATCTGGT GCGGGCGCTT CAGGCGCGTG AGCAATTGAT TGCGCGAGCC
GAAGACCTGG GCGCCGATCC AGAGGTGCTG AGCGATCCGC TGCGACGGCA GAGTTTTCTG
GTGCGCTGGG CGGATCGCTA TGATCGATCA CCTCAGGTGC AGCATCTTCG TGAACAATTG
CGCCGCGCCG CCGTTCCGTG GAAACCGTCG GACTACTACG CGATTCGGGT GGGCGTGAGT
TTTATCGTTG TCATCATCTG CTGGATGATG CTCGATCTGC CGGTCTTTGG CGCCGCATTG
GTGGGCGCGG CCGCATATTT CATTGTGCCG CGCATCTTCT TCTTCCTGCG ACAGAACGCT
TACGTGCGGG CATTCAACAA ACAGTTGGTT GAGGTGACAC AACTGCTGGC AAATGCCCTG
CGGGCTGGCA TGTCGATCCA GCAGGCAATC GGCGAGGTGT CCGAGCGTGT GCCCGAGCCG
GCGCGCAGCG AATTCCGGCA GACCCACCAC GAACTGCTGC TGGGAGACAA TCTGCCGCTG
GCGCTGCACG ACATGCGGCG GCGTGTGTGC AGCCGCGACC TCGATGTGCT GATCAATGCG
ATTGTCGTTC AGCATCAGGC GGGCGGCAAT CTCGTGCGCG TGCTCAATGG CATGGCAAAT
ACCCTGAACG AGCGGCAACG CCTGGAGCGT GAAATTGACT CGCTCACGTC CGAAGCGCGT
TTCTCGGCGC TTGTCGTGAT GGTGTTGCCG ATTTTTTTCC TGTTGATGAT CCGCGACACG
CCGCTCGGTG AAGCGTTGTT CCAGACGGTT ATCGGGTGGG TGTTGCTGGG AGTGTTCGCT
GTGGTGCAGG TTGCCGTCTA CTTCCTGATC CAGCGCGTCG CGCGGATTGA AGTCTGA
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| Protein sequence | MNPSGVEPAV LFGLCIFMLL VSGYHLVRAL QAREQLIARA EDLGADPEVL SDPLRRQSFL
VRWADRYDRS PQVQHLREQL RRAAVPWKPS DYYAIRVGVS FIVVIICWMM LDLPVFGAAL
VGAAAYFIVP RIFFFLRQNA YVRAFNKQLV EVTQLLANAL RAGMSIQQAI GEVSERVPEP
ARSEFRQTHH ELLLGDNLPL ALHDMRRRVC SRDLDVLINA IVVQHQAGGN LVRVLNGMAN
TLNERQRLER EIDSLTSEAR FSALVVMVLP IFFLLMIRDT PLGEALFQTV IGWVLLGVFA
VVQVAVYFLI QRVARIEV
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