| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1708 |
|---|
| Symbol | |
|---|
| ID | 5539186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 2203539 |
|---|
| End bp | 2204360 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640893847 |
|---|
| Product | transposase IS4 family protein |
|---|
| Protein accession | YP_001431818 |
|---|
| Protein GI | 156741689 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3293] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAGCAC CGAGCCAGCC GGCTGTCCAG AGCGAGACGT ACGCGACCGA CCTGACTGAT
GCGCAGTGGG AGCAGATCCG CCCATTTGTC GAGATACAGG CCAAGACCGG GCCGAAGCGG
AGGGTCGACC TGCGAGCCGT GCTCAACGGC TTGCTCTACA AACTGAAGAC CGGGCGCCAG
TGGGAACTGC TGCCGCGCTC GTTTCCGCCC AAGAGCACGG TCCACTACTC CTTTCAGCAG
TGGACCAAGA AAGGCATCCT GGTGCGGATC AACGACGCGT TGCGCCGACG GGTGCGGGTC
GAGGCGGAGG GTCGGGAGAA CGTCGAGCCT ACAGGTGGGG TGATCGACGC CCAGAGCGCC
AAGAGCAGCA TTGCCGGGGG GCCGGAACGG GGCTTCGACG GGGGGAAACA GGTCTATGGG
CGCAAGCGCC ATCGGCTCGC CGACACGCTG GGTTTGCTGA TCACGGCTTG TGTTCACTCG
GCGCGAGCGT ATGACGGAGC AGCTGCCAAG CAGGTGTTCA CCGCGACCAA AGCGCGCGGC
ATCGCGCTGA AGAAGGTATG GGCAGACCAG ACCTATCGTG GTGTGTTGGG CCCGTGGATG
GCGGCCAATG GCATGGGTGA GTTGGAGATT GTCGAGCGGC TGCCGGGGCA GCGCGGCTTT
CAGGTCCAGC CGAAGCGCTG GGTTGTCGAG CGAACCCACG CCTGGTTGAG CGGCAATCGT
CAGCTGAGCC GAGAGTATGA CCATAACCCG CGTCACTCCG AAAGCTGGCT CTACCTCGCC
TCGATCCGCC TCCTCGGCCG CCGTCTCGCC AAAGCGTCGT GA
|
|---|
| Protein sequence | MGAPSQPAVQ SETYATDLTD AQWEQIRPFV EIQAKTGPKR RVDLRAVLNG LLYKLKTGRQ
WELLPRSFPP KSTVHYSFQQ WTKKGILVRI NDALRRRVRV EAEGRENVEP TGGVIDAQSA
KSSIAGGPER GFDGGKQVYG RKRHRLADTL GLLITACVHS ARAYDGAAAK QVFTATKARG
IALKKVWADQ TYRGVLGPWM AANGMGELEI VERLPGQRGF QVQPKRWVVE RTHAWLSGNR
QLSREYDHNP RHSESWLYLA SIRLLGRRLA KAS
|
|---|
| |