| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1690 |
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| Symbol | |
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| ID | 5539166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2178719 |
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| End bp | 2181229 |
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| Gene Length | 2511 bp |
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| Protein Length | 836 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640893827 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001431800 |
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| Protein GI | 156741671 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0132784 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.00000000244427 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGGTGAAA AACTGGTCAT TGTTGAGTCG CCGGCGAAGG CGCGCACCAT TCAGAAATAC
CTTGGGTCGG GGTATCGGGT CGAGGCGTCG ATGGGGCATG TGCGCGATCT GCCGAAGAGC
AACCTTGGCG TTGATCTCGA AGCCAACTTT GCGCCGGTGT ACGAGATTTC GCCGGGCAAA
GAGAAAATTA TCGCGGCTCT GCGCAAATCA ATCCGTCAGG CAGACGCTGT CTATCTGGCG
ACCGACCCGG ACCGTGAGGG GGAAGCGATT GCCTGGCATA TCACCGAGGC GGCGAAGATC
CCACGTGATA AGCCGGTCTA TCGGGTGGTC TTCACTGAAA TCACGCCTGG CGCAGTGCGC
AGCGCCATGG CGTCGCCGCG CGACATTGAT CGGCGGTTGG TCGATGCGCA GCAGGCGCGG
CGCGTGCTGG ATCGCCTGGT CGGCTACAAA CTGTCGCCGC TGTTGTGGGA GAAGGTGCGG
CGGGGGTTGT CTGCGGGGCG GGTGCAATCG GTGGCAGTGC GCCTGATTGT CGAGCGCGAG
CGCGAGATCG AGGCGTTCGT TCCGCAGGAG TACTGGACCA TCGAAGCGGA TCTGTTGAAA
CAGAACGCGA GTGATTCGCA GCGCGATGCC TTTCGCGCCA TGCTGATCGA GCGCTCTGGA
AAGAAACTCG AAAAGTTCGA TATTGGCGCG AGCGATCAGG CGCAGGCGAT TATTGCCGAC
CTGGAAGGCG CCGCCTACAT TGTGCGCAAG GTGACGCGCC GTGATAAACG GCGCAGTCCG
GCGCCGCCGT TTACGACCAG CACGTTGCAG CAGGAAGCCG GGCGCAAACT CGGTTTTTCC
GCCAAGCGCA CGATGGCGGT GGCACAGCAG TTGTACGAAG GGGTCGATAT TGGCGGCGAT
GAGGGTCTGG TCGGTCTCAT CACCTATATG CGCACCGATA GCGTCAATGT ATCGCGTGAG
GCGCAGGAAG AGGCGCGCAG GGTCATTCGT GAGCGATTTG GCGAGGCGTA TCTGCCGGCA
AAGCCGCCGG TCTACAAAAC GAAAGCGAAA GGGGCGCAAG AGGCGCACGA AGCCATCCGC
CCGACCCTCA GCCGCCGCAC GCCGGAGCAG GTGCAACCAT ATCTGACGAG CGACCAGTAT
CGGCTGTACG ATCTGATCTG GAAGCGGTTC GTCGCCAGCC AGATGGAAGC GGCGGTCTTC
GATAGCACGG TGGTGGACAT CGGCGCCGGT CGGGATATTG GTGGTCGCGG CGCGGGGAGC
GACCCGTACA CCTTCCGCGC GACCGGTTCG GTGCTGAAGT TCCCCGGTTT CCTGGCGGTT
TACAACGTCA GCCTGGACGA AGGCGAGGAA GACGAGGATA GTGAGCGGCG GTTGCCGCTG
CTGGAGGAAG GAGAGGCGCT CAATCTCTTG CAGTTGCTGC CGGTGCAACA TTTTACCGAG
CCACCGCCGC GCTTCACCGA AGCCAGCCTG GTCAAAGAAC TGGAACGCCT GGGGATCGGG
CGCCCCTCGA CCTACGCGCC GACGATTTCG ACCATCATTG AGCGCGAGTA TGTAGAACTC
GCCGACAAAA AACTCGTACC GACCACGCTT GGCAGAGTGG TGACCGATCT GCTGGTGGAA
CACTTCCCGA GCATTGTCGA TTACGGCTTC ACGTCCGAAA TGGAGCAGCA ACTCGACGAT
ATTGCCGAGG GCGAAAAAGA GTGGGCGCCG GTGCTGCGCG CCTTCTACAG ACCGTTCGAG
CAAAAATTGG CTGAGGCGCA GCGCAGCATG CGCAATGTCA AGCGCGAAGA AATCCTGACC
GATCTGACGT GCCCGCGCTG CAATCAGGGT CAATTGGCGG TCAAGTTTGG CAGGAATGGC
GAATTTCTGG CGTGCAATCG CTACCCGGAG TGCGATTTCA CCAGCGATTT CCATCGCGAT
AGCGATGGAC GCATCGTGCT GGACGCGCCG GCGTCGCCGG AGACGAGCGA TGTACTCTGC
GATGTCTGCG GGCGACCGAT GATACTCAAG AAGAGTCGTT TCGGTCCATT CCTGGGGTGC
AGTGGATACC CGGAGTGCAA GAACACACGG CGTCTCGACA AACAGGGGAA ACCGGCGCCG
CTGCCGAAGG CGACCGGTGT GACCTGTCCG AAGTGCGGTC AGGGCGAATT GCTCGAACGG
CGCGGCAAGT TTGGGCGACC ATTCTTCGGA TGCAACCGCT ACCCGAAGTG TGACTACCTG
GTCAATTCGC TGGATGAAGT CGCGCATTAT ACGCCTGACG CCAACGAAGC GTCGAAGCCG
CAGGCGGAAG AACCGACGGC GACGGACGCA AAGGCGACTC CTGCCAGAAA ACGGGTTAAG
ACCGATGCCA ATGGCGCGGC GGCTGCCGGA AAACGGGTGA AAACCGATGC CAACGGCGCA
GTTGCCGGGG AACCGATGAA AACGAAGGCG TCCGCCAATG GGAAACGGGC GAAAACCGGG
ACAAACGGCG CTGCAGCGGC GCCGCCAAAG AAACGGGGAA CAGAGCGTTG A
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| Protein sequence | MGEKLVIVES PAKARTIQKY LGSGYRVEAS MGHVRDLPKS NLGVDLEANF APVYEISPGK
EKIIAALRKS IRQADAVYLA TDPDREGEAI AWHITEAAKI PRDKPVYRVV FTEITPGAVR
SAMASPRDID RRLVDAQQAR RVLDRLVGYK LSPLLWEKVR RGLSAGRVQS VAVRLIVERE
REIEAFVPQE YWTIEADLLK QNASDSQRDA FRAMLIERSG KKLEKFDIGA SDQAQAIIAD
LEGAAYIVRK VTRRDKRRSP APPFTTSTLQ QEAGRKLGFS AKRTMAVAQQ LYEGVDIGGD
EGLVGLITYM RTDSVNVSRE AQEEARRVIR ERFGEAYLPA KPPVYKTKAK GAQEAHEAIR
PTLSRRTPEQ VQPYLTSDQY RLYDLIWKRF VASQMEAAVF DSTVVDIGAG RDIGGRGAGS
DPYTFRATGS VLKFPGFLAV YNVSLDEGEE DEDSERRLPL LEEGEALNLL QLLPVQHFTE
PPPRFTEASL VKELERLGIG RPSTYAPTIS TIIEREYVEL ADKKLVPTTL GRVVTDLLVE
HFPSIVDYGF TSEMEQQLDD IAEGEKEWAP VLRAFYRPFE QKLAEAQRSM RNVKREEILT
DLTCPRCNQG QLAVKFGRNG EFLACNRYPE CDFTSDFHRD SDGRIVLDAP ASPETSDVLC
DVCGRPMILK KSRFGPFLGC SGYPECKNTR RLDKQGKPAP LPKATGVTCP KCGQGELLER
RGKFGRPFFG CNRYPKCDYL VNSLDEVAHY TPDANEASKP QAEEPTATDA KATPARKRVK
TDANGAAAAG KRVKTDANGA VAGEPMKTKA SANGKRAKTG TNGAAAAPPK KRGTER
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