| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1687 |
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| Symbol | |
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| ID | 5539163 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2172628 |
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| End bp | 2174382 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640893824 |
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| Product | PA14 domain-containing protein |
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| Protein accession | YP_001431797 |
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| Protein GI | 156741668 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3889] Predicted solute binding protein |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000000321103 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCACGAC GATTTCAACC TGGACAGGCG CTCGTCGAGT TCGTGATCGC CTCGACGCTC
ATCCTGCTGC TGCTGGCGGC TGCGGTCGAT ATCGGTCTGC TCTTCTTCAA TATGCAGGGG
CTGACCACCG CAGCGCAGGA AGGCGCCACC TACGGCAGCC GCTACCTGGT CGTTCAGCCG
AACGGGACGG TTGACCTCGA CTACACTATG ATCCGCGCGC GCGTGCGCCA GGAAGCCGGC
ACAACCGGCG GCATCAACTT CGTCAACATG TACGACCTGA ACAGCGATGC CATTCCCGAC
GCCGAAGATA CCAACGGCGA CGGCGTGCTC GATCATTTTC AGTACTTCCT CGATCAGAAC
GGTGATGGGC GCGCCATTGG CGACCCGGTC ACCGGACTGA TCCCCGAAGG AACGCAGCCT
GCCGGGTATG TCCGGTTGAT CGACCAGTAC ATCCTGGTGC AGGCGATTGA AGACGTCTTC
CCCTTCAACG GCAATCCGCT GGGACCGGAG GACGCCAACG GCAATCGCGC CGACGACCTG
GTTGCCGATG TCGATACCAC GCCATGCGCA AATCTGGCGG ATCCGAACCG GCAGTGTTAT
GTCTTCGTGA TTGTGAAGTC CGACTACAAC ACGGTCTTTG GCTTCACGCC CGCATTCGGC
GACAAAGTGC CGCTCAGTTC GCGCTTTGTG ATGCCGCTGC GCGCTGGCTT TGTCTCGCCG
GGCGCGCCGA CGAACACGCC GGTGGTGCAG ACCAATACGC CAACACCAAC GCCAACCGAT
ACGCCCACTC CAACTGCAAC GAATACGCCG ACGCGCACGC CAACCAATAC GGCGTCGCCG
ACGACAACCA ATACACCAAC CAACACGCCG ACGCGCACCA ATACGCCGAC GCGCACCAAT
ACGCCGACGA ACACCAATAC GCCGACGAAC ACCAATACGC CGACGCGCAC GCCAACGTTT
ACGCCCACAC CGACGCCATG TGCTGGCGGC ACGGGCAACG GTCTGCGCGG TGACTACTTC
ATCTACACGC CGGGCGGCAG CGTTGGCACG ACCAACTTCT TCCCCGGCGC GCCGGTCGCC
AGTCGCCTCG AGAATATCAA TATGGCGCGG AGCGATACCT CGCCCATCGC CGGCGTCGGC
AACGACTACT TCTCGGTGCG CTGGACGGGG CAGGTCGAGC CGTTGTTCAG CGGCGAGTAC
ACCTTCTACG CTAACACCGA CGATGGCGTG CGCGTGTGGG TGAATGGCGT GCAGATCATC
AATGACTGGC GCACCAAGAA TAGCGAAACC AACGGGAGGA TCACTCTGAC CGCCTGCCAG
CGCGTGAACA TTACGGTCGA GTACTTCGAG TGGACCGGTA GCCAGAACGC AATCCTCTCA
TGGCAGCACG CGAACGTGCC GAAGCAGGTC ATCCCCATCC AACGGCTCTA TGCGAGCGGC
TCACCGCCGG CAACCGCGAC GCGCACGCTG ACGCCGACGC GCACCGATAC GCCGACGCCG
TCGCGCACGC CGACGCGCAC GCTGACACCG ACGATTACCA ATACGCCGAC GCCGTCGCGC
ACGCCGACGC GCACGCTGAC ACCGACGATT ACCAATACGC CGACAAATAC GCCGCCGGCG
ACGAACACGC CAACCCGCAC GCCGACGCTC ACACCGTCGC ACACGCCGAC GCTCACACCG
TCGCGCACGC CGACGAATAC GCCAACCCGC ACGCCGACGC TCACACCGTC GCGCACGCCG
GACACCGGAA CGTAA
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| Protein sequence | MARRFQPGQA LVEFVIASTL ILLLLAAAVD IGLLFFNMQG LTTAAQEGAT YGSRYLVVQP
NGTVDLDYTM IRARVRQEAG TTGGINFVNM YDLNSDAIPD AEDTNGDGVL DHFQYFLDQN
GDGRAIGDPV TGLIPEGTQP AGYVRLIDQY ILVQAIEDVF PFNGNPLGPE DANGNRADDL
VADVDTTPCA NLADPNRQCY VFVIVKSDYN TVFGFTPAFG DKVPLSSRFV MPLRAGFVSP
GAPTNTPVVQ TNTPTPTPTD TPTPTATNTP TRTPTNTASP TTTNTPTNTP TRTNTPTRTN
TPTNTNTPTN TNTPTRTPTF TPTPTPCAGG TGNGLRGDYF IYTPGGSVGT TNFFPGAPVA
SRLENINMAR SDTSPIAGVG NDYFSVRWTG QVEPLFSGEY TFYANTDDGV RVWVNGVQII
NDWRTKNSET NGRITLTACQ RVNITVEYFE WTGSQNAILS WQHANVPKQV IPIQRLYASG
SPPATATRTL TPTRTDTPTP SRTPTRTLTP TITNTPTPSR TPTRTLTPTI TNTPTNTPPA
TNTPTRTPTL TPSHTPTLTP SRTPTNTPTR TPTLTPSRTP DTGT
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