| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1682 |
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| Symbol | |
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| ID | 5539158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2163192 |
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| End bp | 2164589 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640893819 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001431792 |
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| Protein GI | 156741663 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000847512 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCGCTCT TGAAACGCAT CGGTGGAACT CCCGGCGCAA CCGGACAACT TCCGAACACA
CCGGCCGTCG GCGGCGCAGC GGCGGCTCGT CCTGGCGCTC CGGTCGCCCC GCGCCGTGAG
GAAGAGAATA GCATCATCGA ACTGCGGCAG CGCGTTCAGC AGCGCCTGAT CAATGAACTC
GACCCGCGCC TCGACCTTTC CAACGTCGCC AGAGTGCGGC AGCAGGTCGA GGAGATTTTC
AATACGATCC TTGACAGCGA AAATATTGTT CTGTCGCGGT CGGAGCGCGC GCGCCTGTTC
GAGTCGATTG CTGCCGATAT TCTCGGCTTC GGACCGCTCC AGGAATTGCT CAACGATCCG
GAGATTTCCG AGATTATGGT CAATGGTCCC AGGAAGGTCT ATGTCGAAAA GCGCGGCAAG
ATTCAGTTGA GCGACGTCAC GTTCGTCGAT GAACAGCACG TCCTGCGAGT CATCGACCGG
ATCGTCGCTC CGCTTGGTCG CCGGATCGAT GAGTCTTCGC CAATGGTCGA TGCGCGCCTC
CCGGATGGCA GCCGTGTGAA TGCGGTGATC CGCCCGATTG CGCTCTGTGG ACCAACGATC
AGTATTCGGA AGTTTCGCAA GGAAGGCATT ACGATTGAAG ACCTGATTCG CTTCGGCTCG
CTGACCCGCG AAATGGCGGA GTTTCTGTCG GCATGCGTCC GCGCATCGCT CAATATCGTG
GTTTCCGGCG GCACCGGTTC GGGCAAGACG ACCATGCTCA ATGTGCTCTC GTCGTTCATT
CCCGACGATG AACGCATTAT CACGGTCGAG AATGCCGCAG AATTGCAGTT GCGCCAGGAG
CACGTCGTGC CGCTCGAGTC GCGTCCGCCA AATGTCGAGG GCAAGGGCGA GATCAGCATT
CGCGATCTGG TGATCAATAC CCTGCGTATG CGCCCGGAAC GCATCGTCGT CGGCGAGTGT
CGCGGCGGTG AGGCGCTGGA AATGCTCCAG GCGATGAATA CCGGTCACGA CGGGTCGATG
ACCACGCTGC ACGCGAACTC GCCACGCGAC GCGATTGCGC GTATCGAAAC GATGTGCCTG
ATGGCCGGTA TGGACCTGCC GGTGCGCGCT ATCCGTGAGC AGATTGCGTC GGCGGTGAAT
TTGATCGTTC AACTGGCGCG CCTGAAAGAT GGATCGCGCA AGGTGATCTA CATTACCGAA
GTGCAAGGCA TGGAGGGCGA TGTTGTCGTG CTGTCGGACA TTTTTGTGTT CGAGCAGCAG
GGGATCGATG AGCGCGGCAA GATCATCGGT CAACTGAAGC CGACCGGCAT CCGCCCGCGA
TTTATCGACC GTTTCGAGGA ACGCAATATT TATCTGCCGC CAAATATTTT TGGCTACAGC
AGCGGATCGT TCTTCTAG
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| Protein sequence | MSLLKRIGGT PGATGQLPNT PAVGGAAAAR PGAPVAPRRE EENSIIELRQ RVQQRLINEL
DPRLDLSNVA RVRQQVEEIF NTILDSENIV LSRSERARLF ESIAADILGF GPLQELLNDP
EISEIMVNGP RKVYVEKRGK IQLSDVTFVD EQHVLRVIDR IVAPLGRRID ESSPMVDARL
PDGSRVNAVI RPIALCGPTI SIRKFRKEGI TIEDLIRFGS LTREMAEFLS ACVRASLNIV
VSGGTGSGKT TMLNVLSSFI PDDERIITVE NAAELQLRQE HVVPLESRPP NVEGKGEISI
RDLVINTLRM RPERIVVGEC RGGEALEMLQ AMNTGHDGSM TTLHANSPRD AIARIETMCL
MAGMDLPVRA IREQIASAVN LIVQLARLKD GSRKVIYITE VQGMEGDVVV LSDIFVFEQQ
GIDERGKIIG QLKPTGIRPR FIDRFEERNI YLPPNIFGYS SGSFF
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