Gene Rcas_1682 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1682 
Symbol 
ID5539158 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2163192 
End bp2164589 
Gene Length1398 bp 
Protein Length465 aa 
Translation table11 
GC content59% 
IMG OID640893819 
Producttype II secretion system protein E 
Protein accessionYP_001431792 
Protein GI156741663 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value8.47512e-06 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCGCTCT TGAAACGCAT CGGTGGAACT CCCGGCGCAA CCGGACAACT TCCGAACACA 
CCGGCCGTCG GCGGCGCAGC GGCGGCTCGT CCTGGCGCTC CGGTCGCCCC GCGCCGTGAG
GAAGAGAATA GCATCATCGA ACTGCGGCAG CGCGTTCAGC AGCGCCTGAT CAATGAACTC
GACCCGCGCC TCGACCTTTC CAACGTCGCC AGAGTGCGGC AGCAGGTCGA GGAGATTTTC
AATACGATCC TTGACAGCGA AAATATTGTT CTGTCGCGGT CGGAGCGCGC GCGCCTGTTC
GAGTCGATTG CTGCCGATAT TCTCGGCTTC GGACCGCTCC AGGAATTGCT CAACGATCCG
GAGATTTCCG AGATTATGGT CAATGGTCCC AGGAAGGTCT ATGTCGAAAA GCGCGGCAAG
ATTCAGTTGA GCGACGTCAC GTTCGTCGAT GAACAGCACG TCCTGCGAGT CATCGACCGG
ATCGTCGCTC CGCTTGGTCG CCGGATCGAT GAGTCTTCGC CAATGGTCGA TGCGCGCCTC
CCGGATGGCA GCCGTGTGAA TGCGGTGATC CGCCCGATTG CGCTCTGTGG ACCAACGATC
AGTATTCGGA AGTTTCGCAA GGAAGGCATT ACGATTGAAG ACCTGATTCG CTTCGGCTCG
CTGACCCGCG AAATGGCGGA GTTTCTGTCG GCATGCGTCC GCGCATCGCT CAATATCGTG
GTTTCCGGCG GCACCGGTTC GGGCAAGACG ACCATGCTCA ATGTGCTCTC GTCGTTCATT
CCCGACGATG AACGCATTAT CACGGTCGAG AATGCCGCAG AATTGCAGTT GCGCCAGGAG
CACGTCGTGC CGCTCGAGTC GCGTCCGCCA AATGTCGAGG GCAAGGGCGA GATCAGCATT
CGCGATCTGG TGATCAATAC CCTGCGTATG CGCCCGGAAC GCATCGTCGT CGGCGAGTGT
CGCGGCGGTG AGGCGCTGGA AATGCTCCAG GCGATGAATA CCGGTCACGA CGGGTCGATG
ACCACGCTGC ACGCGAACTC GCCACGCGAC GCGATTGCGC GTATCGAAAC GATGTGCCTG
ATGGCCGGTA TGGACCTGCC GGTGCGCGCT ATCCGTGAGC AGATTGCGTC GGCGGTGAAT
TTGATCGTTC AACTGGCGCG CCTGAAAGAT GGATCGCGCA AGGTGATCTA CATTACCGAA
GTGCAAGGCA TGGAGGGCGA TGTTGTCGTG CTGTCGGACA TTTTTGTGTT CGAGCAGCAG
GGGATCGATG AGCGCGGCAA GATCATCGGT CAACTGAAGC CGACCGGCAT CCGCCCGCGA
TTTATCGACC GTTTCGAGGA ACGCAATATT TATCTGCCGC CAAATATTTT TGGCTACAGC
AGCGGATCGT TCTTCTAG
 
Protein sequence
MSLLKRIGGT PGATGQLPNT PAVGGAAAAR PGAPVAPRRE EENSIIELRQ RVQQRLINEL 
DPRLDLSNVA RVRQQVEEIF NTILDSENIV LSRSERARLF ESIAADILGF GPLQELLNDP
EISEIMVNGP RKVYVEKRGK IQLSDVTFVD EQHVLRVIDR IVAPLGRRID ESSPMVDARL
PDGSRVNAVI RPIALCGPTI SIRKFRKEGI TIEDLIRFGS LTREMAEFLS ACVRASLNIV
VSGGTGSGKT TMLNVLSSFI PDDERIITVE NAAELQLRQE HVVPLESRPP NVEGKGEISI
RDLVINTLRM RPERIVVGEC RGGEALEMLQ AMNTGHDGSM TTLHANSPRD AIARIETMCL
MAGMDLPVRA IREQIASAVN LIVQLARLKD GSRKVIYITE VQGMEGDVVV LSDIFVFEQQ
GIDERGKIIG QLKPTGIRPR FIDRFEERNI YLPPNIFGYS SGSFF