| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1617 |
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| Symbol | |
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| ID | 5539093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2086594 |
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| End bp | 2088651 |
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| Gene Length | 2058 bp |
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| Protein Length | 685 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640893754 |
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| Product | shikimate/quinate 5-dehydrogenase |
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| Protein accession | YP_001431727 |
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| Protein GI | 156741598 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5322] Predicted dehydrogenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGGA TTGTAAGCAT CAGTCTTGGT TCCGCACGAC GCGATTATCA GTTCGTGACA
ACCGTCCTGG GGCAACAGAT CGAGGTGCGG CGCATTGGCG CCAATGGCGA TACGGCGCTC
GCAGCCTCGC TGGTGCGCGA CTTCGACGGC AAAGTGGATG CTATCGGATT GGGAGGTCTG
ACTCCCGTGT TCCACGTCGG CGCAGCGCGC TACCCGCACC ACGAAGCACT CACGATTGCG
CGCGAGGCAC GCCGTACACC GGTCGTCGCC GGCAACCTGA TCAAGCAGAC CCTCGACCGG
TGGTGCGTGC AGCAGGCGAA CCAGGCGCAG CGCGGTATGT TCAACTATCG CCGCATCCTG
GTAACGAGCG GCATCGACCG TTATGCGCTG GCGCAGGCAC TGGCGCAGTA CGACGCAGAG
TTGCGCTTTG CCGATCCGGT CGTTCACAGC GGACTGCCGT TTCTACCGCT GCCGCGGTCC
ATCCCGCAGC TCGACATGTA TGCCGCAACA ACGCTGCCAA TCGCAGCGCT CCTGCCCTAC
CGCGTGCTGC ATCCGGTGGC GCTGGGCAGC GAAGGGCACG ATGCGCGCGC CGAAAAACAC
TTCGCCTGGG CGGATGTCAT TGCCGGCGAT TTTGCCTACA TCCGGCGTTT CGCCCCGCGC
GATCTGAACA ATAAAGTCAT TGTCACCGAT GATCCGTCGC CGGAAGAGAT CGAGGACCTG
CGCGCGCGTG GCGTCCGCAC GCTCGTTACG CTCTCGCCGC GCCTGGAGAG CGCCGATAAG
ACGCACCGCC CCTTCGTCGC CGCTGATGTG CTCGAAGCGA TTGTCGTGGC GATTCTTGAG
TCAGGTCCGA CGCCAACTGA GGGCGATATC ATCAATTTCA TCGATGAGGC GGATTGGGAA
CCGGAGGTGA TGACGTTGAG CGACACGGCG GAGAAGCCAC GGTTTGCCTT CGTCATCCAT
CCGCTGTCGC CGAAGTATAT CGCCAATCAC CCGCGTTTCC GTTTTACGCG CTACCTGCCA
GAACGCCTGG TCGAACGGGT GGCGGCGCAT TTCCCGCCCA TGTACATCTC GAAAATCCGC
GGCATTCGCT CACAGGCGAC CGGTGAGGAA ATCGAAGGAT TGTTGTTCAC CCTGGGGGCG
ACGCCACGCG AGTTGATGCG CCGCGACACG GCGTTCACCT ATCGCCGCCT GATCAAGTGC
GCTCGCATGG CGGAGCGGAT GGGCGCGAAA ATCATGGGGC TTGGCGCGTT CACGTCGGTG
GTCGGTGATG CAGGCATTAC CGTTGCACAG AAGAGCGACA TCGGCATTAC ATCGGGCAAC
TCGCTGACGG TTGCGGCGAC GCTCGAAGCC GCCAAGCAGG CGGTCATCAA GATGGGCGCG
ACCGACCTGA CGCGCGGCAA GGCAATGGTC GTCGGCGCAA CCGGTTCAAT CGGCTCGGTC
TGCGCCCGGT TGCTGGCACA GGCGATCGGT GATGTCGTGC TGGTTGCACC GCGTGTCGAA
CGTCTGCTGG CGCTCAAGAA GCAGATCGAG GCGGAAACGC CAGGCGCGCG GGTGACGGCG
GCGACCAGCG CCGATGCGTA CCTGGCGGAG TGCGATCTGA TCGTCACCAC CACGTCAGCG
TTGAGCGGTC GAGTGATCAA TGTCGATAAG CTCAAGCCCG GCGCCGTTGT GTGCGATGTG
GCCCGCCCGC CCGATGTCAA AAAAGAAGAT GCCGCCCGCC GCCCCGATGT GCTGGTGATC
GAGTCAGGTG AAATCCTGCT GCCGGGTGAA CCCGATTTTG GCTTCGACAT CGGACTGCCG
CCGGGCACGG CATATGCCTG CCTCTCCGAG ACGGCGCTGT TGACGATGGA ACATATGTAC
GGCGATTACA CCCTTGGGCG GAATATCGAC ATTGAGAAGG TCAAGGAGAT GTATCGCCTG
ATGAAGAAAC ATGGGCTGCA ACTCGCCGGT CTGCGTTCGT TCGATGAGTA TATCACCGAC
GAGATGATCG CAGAAAAACG ACGCCTGGCG GACGAGCGAC GTCGTCAACT CGGGATGCCA
GTTGCAGCAA CACGGTAA
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| Protein sequence | MKRIVSISLG SARRDYQFVT TVLGQQIEVR RIGANGDTAL AASLVRDFDG KVDAIGLGGL
TPVFHVGAAR YPHHEALTIA REARRTPVVA GNLIKQTLDR WCVQQANQAQ RGMFNYRRIL
VTSGIDRYAL AQALAQYDAE LRFADPVVHS GLPFLPLPRS IPQLDMYAAT TLPIAALLPY
RVLHPVALGS EGHDARAEKH FAWADVIAGD FAYIRRFAPR DLNNKVIVTD DPSPEEIEDL
RARGVRTLVT LSPRLESADK THRPFVAADV LEAIVVAILE SGPTPTEGDI INFIDEADWE
PEVMTLSDTA EKPRFAFVIH PLSPKYIANH PRFRFTRYLP ERLVERVAAH FPPMYISKIR
GIRSQATGEE IEGLLFTLGA TPRELMRRDT AFTYRRLIKC ARMAERMGAK IMGLGAFTSV
VGDAGITVAQ KSDIGITSGN SLTVAATLEA AKQAVIKMGA TDLTRGKAMV VGATGSIGSV
CARLLAQAIG DVVLVAPRVE RLLALKKQIE AETPGARVTA ATSADAYLAE CDLIVTTTSA
LSGRVINVDK LKPGAVVCDV ARPPDVKKED AARRPDVLVI ESGEILLPGE PDFGFDIGLP
PGTAYACLSE TALLTMEHMY GDYTLGRNID IEKVKEMYRL MKKHGLQLAG LRSFDEYITD
EMIAEKRRLA DERRRQLGMP VAATR
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