| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1598 |
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| Symbol | rpoB |
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| ID | 5539074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 2055798 |
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| End bp | 2059535 |
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| Gene Length | 3738 bp |
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| Protein Length | 1245 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640893736 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001431709 |
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| Protein GI | 156741580 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0310456 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGACGAG CGGCTCCCCG GCGACTGACA AGCAAGAGCG AGGTGCCAAT GCCCCCGTTG
ACCGAAAGTG TTGTGCTCCA GCCATTGATT ATGCCGAATG ATATTGGCGC CGACAGCCTG
CATCGCAGCA AGATCGAGCG TTATTCATTC GCGCGCATTT CAGACGCGAT CGAGTTGCCC
AAACTGATCG AAACGCAGTT GAAAAGTTTC GAATGGTTCC GTAAAGAAGG ATTGCGTGAG
CTGTTCGACG AGATATCGCC GATTACTGAT TTTACCGGCA AAAATATGGA ACTGCGATTC
CTCGATTACC ATTTCGGGGA ACCGCGTTAT AACGAACACG AGTGCCGCGA GCGGGGAATC
ACCTATTCGG CGCCGATTCG CGTGAATGTG CAGTTGCGCA TTCTGAGCAC CGGGGAATTA
AAAGAGAGTG AAATCTTTCT AGGCGATTTC CCGTTGATGA CGGAAAATGG AACGTTCGTC
ATTAATGGCG CCGAGCGGGT GGTGGTTTCG CAGTTGATCC GCTCGCCAGG GGTCTATTTC
AAAGAAGAAA AAGACCCCAC ATCCGGGCGA AGCCTGCACT CGGCAAAGTT GATCCCGAGC
CGTGGCGCCT GGCTTGAGTT CGAGACAAAT AAGCGCGATG TGATCTCCGT CAAGGTTGAT
CGCAAGCGCA AGATTCCGGT AACGATCCTG TTGCGCGCCG TTCTTGGATG GAAGGCGAAC
CCCGATGGCA GCGGGCAGTG GGCGCCGGAT ACCGAACTCG ACACGCGCGG GCGCGATGAG
GATGTGTTGG AACTGTTCAC GCACGTGGAA ACCGGCGAAC ATCAGTACAT CCGCGTAACG
CTCGATAAAG ACCCGGCGCG ACACGCCAAA GAGGCGCTCC TGGAGCTGTA TAAGCGCCTG
CGCCCGGGCG ATCCGCCAAC GCTCGATAAT GCGCGCAATC TGATCGAGGC GCTGCTCTTC
AATCCGCGAC GCTACGATCT GTCGCGGGTT GGGCGCTATA AACTGAACAA GAACCTGTGG
GAGAAGGATA CTCGCCTCGA AGTGCGCAGT CAGGCGCCGG ATCTGAAGGT GCGCGTGCTG
CTGCCCGATG ATATCTTCAA GATCGTTGAG CGAATTATTC AACTGAACAA TGAAACACCC
GGTCTGCGCG CCGATGATAT CGATCACCTC GGCAACCGCC GCGTGCGTAC CGTCGGCGAA
CTGATCCAGC AGCAGTTCCG CGTCGGTCTG CTGCGGATGG AGCGCGTCAT CAAGGAGCGT
ATGTCGCTGC AAGACCCTGA GACCGCAACG CCCAACGCGC TGATCAATAT TCGCCCGGTC
GTCGCGGCAA TGCGCGAGTT CTTCGGCGGA GCGCAACTCT CGCAGTTCAT GGATCAGACG
AATCCGCTTG CAGAATTGAC CCATAAACGC CGCCTTTCAG CTCTCGGTCC CGGCGGTCTC
AGCCGCGACC GCGCCGGCTT TGAGGTGCGC GACGTTCATC ACTCGCACTA TGGGCGCATC
TGCCCGGTGG AGACGCCGGA GGGTCCGAAT ATCGGTCTGA TCGGAACGAT GTCCACCTAT
GCGCAAGTCA ATGAGATGGG GTTTCTGGAG ACGCCGTATC GCAAGGTGTA CCGCGAGGTG
CCGAACGCGA GCGAATGGGA GCGTCAGGGG TTGCTCCTGC GCGATGTGCG CGACCTGCGC
ACCGGCGAGT TGATCGCGGT GCGTGGGACA CGTGTCGATG CCGCCGTGGC GCGCCGCATT
GCGGTTTCGT TGCTGCGCGG GCAGATTCTG CGCGAGGATA TCGTCGATCC GAAGACCGGC
GAGGTGATTG CCAGCACCGG ACAGGAAATT AACCGCGCGA TTGCGGAACG GATCGTCGAA
ACGCCACTGC GAACGATCAA GATCCGCCCG ATCGTGTCGC AGGAAGTCGA TTATCTCTCC
GCCGACGAGG AAGACCGATT TGTCATTGTG CAGGCGAATG CGCCCCTCGA TGAGCACAAT
CGCTTCCTGG AAGGCACGGT GTCGGTGCGC TATGCGGGCG ATTTCGACGA TGTGCCGATT
GAGCGCGTCG ATTATATGGA TGTGTCGCCC AAGCAGGTGG TAAGCGTCTC GACGGCGCTG
ATCCCCTTCC TGGAGCACGA CGATGCCAAC CGCGCGCTGA TGGGGTCGAA TATGCAGCGC
CAGGCGGTGC CGCTTCTCCG CCCCGATGCG CCAATCGTCG GCACCGGCAT GGAGTATGTG
GCGGCGCGCG ATAGCGGGCA GGTGGTGGTC GCCAAAGCCG ATGGCGTGGT GCTCTCGGCA
ACCGGTGATG AGATCATCAT CCTTGAAGAC GACGGCAATG AGCGATCATA TCGGCTGCGC
AAGTTTATGC GCTCGAACCA GGATACCTGC ATCAATCAGC GTCCAAGCGT CTCCCGTGGT
CAGCGCGTCC GCAAAGGCGA CATCATTGCG GATAGTTCCA GCACCGATAA TGGCGAACTG
GCGCTCGGGC AGAATGTGCT GGTGGCGTTC ATGCCGTGGG AAGGCGGCAA TTTTGAGGAC
GCCATTCTGG TCTCGGAGCG CCTGGTGCGC GAAGATATCT TCACCTCGAT CCATATCGAG
AAGTATGAAG TCGAAGCGCG CGATACCAAA CTCGGGCCTG AGGAGATCAC GCGCGATATT
CCCAACGTCG GGCAGGAGAG CCTGCGCAAC CTCGATGATC GCGGGATTAT CTATATTGGC
GCTGAGGTGC AACCAAATGA CATTTTGGTG GGGAAGATCA CGCCGAAAGG CGAAACCGAT
CTGACGGCGG AAGAGCGCCT GCTGCGCGCG ATCTTTGGCG AGAAGGCGCG CGAGGTGAAG
GATTCGTCGC TGCGTGTGCC AAACGGTGTG CGCGGGAAGG TGATCGATGT GAAGGTCTTC
ACCCGCAATG ATGATGTCGA ACTGCCGGTC GGCGTTAATC AGCGCGTCGA TGTGCTGCTC
TGCCAGAAAC GCAAGATTTC GGCCGGCGAC AAGATGGCGG GACGTCACGG CAATAAGGGT
GTGGTCAGCC GTATCCTGCC AATCGAGGAT ATGCCGTTCC TGCCGGATGG GACGCCGGTT
GACATCATTT TGAATCCGAT CGGCGTGCCA AGCCGTATGA ATATCGGACA GATCCTCGAA
ACTCACCTGG GGTGGGCGGC AGCGCGCCTC GGCTATCGCG TCGCCACGCC GGTCTTCGAT
GGGGCAAGCG AGACGGAGAT CAAGGAGTGG CTCAAACGCG CCGATCTGCC GCCCGACGGC
AAGATTACCC TCTACGATGG GCGCACCGGT GAACCGTTCG ACCATCCGGT GACCGTCGGC
TATATCTATA TGATGAAACT GGCGCACCTG GTGGAGGATA AGATCCACGC GCGCTCCACC
GGACCGTACA GCCTGGTGAC GCAGCAACCG CTCGGCGGCA AGGCGCAGTT CGGCGGTCAG
CGCTTCGGCG AGATGGAAGT CTGGGCGCTC GAGGCGTATG GCGCCGCCTA TACGTTGCAG
GAAATGCTGA CCGTGAAGTC GGACGATGTG GTGGGTCGCG TGAAGACCTA TGAGGCAATT
GTGAAGGGGG AGCCGATCCA GGAAGCCGGC GTGCCGGAAA GCTTTAAGGT GCTGATCAAA
GAATTGCAGT CCCTCGGTCT GTCGGTCGAG GTCCTGAGCG CCGATGAAAC GCCGGTGGAA
CTGACCGACG ATGTGGACAG CGACCTGGCA GCGCTCGATG GCATCAATCT GTCGGGAATG
GAGCGCGGTG AATTCTAA
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| Protein sequence | MRRAAPRRLT SKSEVPMPPL TESVVLQPLI MPNDIGADSL HRSKIERYSF ARISDAIELP
KLIETQLKSF EWFRKEGLRE LFDEISPITD FTGKNMELRF LDYHFGEPRY NEHECRERGI
TYSAPIRVNV QLRILSTGEL KESEIFLGDF PLMTENGTFV INGAERVVVS QLIRSPGVYF
KEEKDPTSGR SLHSAKLIPS RGAWLEFETN KRDVISVKVD RKRKIPVTIL LRAVLGWKAN
PDGSGQWAPD TELDTRGRDE DVLELFTHVE TGEHQYIRVT LDKDPARHAK EALLELYKRL
RPGDPPTLDN ARNLIEALLF NPRRYDLSRV GRYKLNKNLW EKDTRLEVRS QAPDLKVRVL
LPDDIFKIVE RIIQLNNETP GLRADDIDHL GNRRVRTVGE LIQQQFRVGL LRMERVIKER
MSLQDPETAT PNALINIRPV VAAMREFFGG AQLSQFMDQT NPLAELTHKR RLSALGPGGL
SRDRAGFEVR DVHHSHYGRI CPVETPEGPN IGLIGTMSTY AQVNEMGFLE TPYRKVYREV
PNASEWERQG LLLRDVRDLR TGELIAVRGT RVDAAVARRI AVSLLRGQIL REDIVDPKTG
EVIASTGQEI NRAIAERIVE TPLRTIKIRP IVSQEVDYLS ADEEDRFVIV QANAPLDEHN
RFLEGTVSVR YAGDFDDVPI ERVDYMDVSP KQVVSVSTAL IPFLEHDDAN RALMGSNMQR
QAVPLLRPDA PIVGTGMEYV AARDSGQVVV AKADGVVLSA TGDEIIILED DGNERSYRLR
KFMRSNQDTC INQRPSVSRG QRVRKGDIIA DSSSTDNGEL ALGQNVLVAF MPWEGGNFED
AILVSERLVR EDIFTSIHIE KYEVEARDTK LGPEEITRDI PNVGQESLRN LDDRGIIYIG
AEVQPNDILV GKITPKGETD LTAEERLLRA IFGEKAREVK DSSLRVPNGV RGKVIDVKVF
TRNDDVELPV GVNQRVDVLL CQKRKISAGD KMAGRHGNKG VVSRILPIED MPFLPDGTPV
DIILNPIGVP SRMNIGQILE THLGWAAARL GYRVATPVFD GASETEIKEW LKRADLPPDG
KITLYDGRTG EPFDHPVTVG YIYMMKLAHL VEDKIHARST GPYSLVTQQP LGGKAQFGGQ
RFGEMEVWAL EAYGAAYTLQ EMLTVKSDDV VGRVKTYEAI VKGEPIQEAG VPESFKVLIK
ELQSLGLSVE VLSADETPVE LTDDVDSDLA ALDGINLSGM ERGEF
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