Gene Rcas_1576 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1576 
Symbol 
ID5539052 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2024700 
End bp2026982 
Gene Length2283 bp 
Protein Length760 aa 
Translation table11 
GC content61% 
IMG OID640893714 
Productpeptidase domain-containing protein 
Protein accessionYP_001431687 
Protein GI156741558 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.599229 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCACGTC TGCATCTTCG ATCGTTGGTC GCGTGTCTGT TTATCTTCTT TGTGGCGCTC 
TCCGCAATGG CTACGCCAGC CCGCCTTGCT GCTGCGCCAC AGGATTTCCG CTGGGAGCCT
GCGTCGCGCG CCTATACCGT CACAAATCAG ACGCCAAATA ACACGGTCCT GGTCGTCAAC
GATTTTCGCC TGCGCAACGA TGATACAGTG GCGGCGACAT TCACGATTTC CTTCCCGGAG
CGACCAAGCG GTTGGCAGGT GAGTACGACG ATCGCGCAGC CGATTGCCGT CAATCAGGCG
ACAACGTCGG CGGTCATTCC TATTCGCATT ATCATACCGC CGAATACGCC CAATGGTGTG
CGCACGGTGA CCGTGCGGGC GACGCGCACC GACGTAACGC CGAACCTGAC GGCGGAAGCG
GTGATCCAGG TGACGCTGAC AGCGCCGGCG CCGGGGACGC CCCCGGTGTC TGCGTGTCCC
GAGTTGTCCG ATCCGGGGAA CAATTTCGAT GGCGCTTCGC TCATCCTGGT CGATCGCGCC
GAACGGCACG GTATCTGTGC GATTGGCGAT GAAGACTGGT ATAAGTTTGG CGCGGTCGCC
GGAAAGTACT ATTCGATTGA TATTCCCGAA ATGGATGCCG GTCTCGATCT TTCGCTCGAA
CTGTACGACT CGAACCGGCG CCTCATTGAC TCGAACGATG ATTTTCCGTT TCGCGGCGGG
ACGCAAACAC TGACCGACAC GCGCCCGCTG ATCCAGTCGT TCCGTGCGCC GACCGACGGG
TTTTTCTATG TGCGGGTGCG CGATACGCTG GGCATCGGCG GATCCGATCT CAGTTACACG
ATTATTGTGC GCGGCGAGAG TTATGGTCCC TTCCCGCCAT TCGTTTCATC GCTCTGCAAC
GACATGTATG AACAGGATGG GCTGCCGGAA CTTGCGCGGC AGATCAATCA GAACGAGACG
CAACGCGGTC GCCTTCTCTG TCCGAATGGC GACGCCGATT GGGTAAAGTT CTTTGCGCTT
GCCGGGTATA CGTACTATCT CTATACGAAT ACCAGACCGT ATGCGCCGCC AGACGCCAAC
GGCATTCTGC CCGGCGCCGA TACGCTTCTC TTTCTGTTTG GGCGCGATGC GATCACGTTG
ATCGACTCGA ACAACAACAT CGAAGGTGGC GCGACGCTCG ACTCGCTGGT GCGTTTTACC
CCTGCCGCCG ATGGGATTTA TTATGCGCAG GTCAAGAATG TTGGTGATAT CGGCGGGATG
TTCATCCGCT ACGATCTGAC GCTGAAAGCA TGCCCCGTTG AGCAACCGGC GTGCGCTCCT
CCACCAGATA TTCTGCCAGC GCTGCCGCCG GCGGCGGTCG AGGTCGTTCC GCTGGCGCAG
GATGTCGCGC CGTTGATCGA GGCGCATCTG GCGCCGCAGG TGGCGCCAGA ACTGGTTGCC
GACGCTGGGG GCGAAATGAT TGTGGCGCTC GCCGGCGCTC AACCGATTGC ACGCCAGATT
GATCCGGCAT TCACCGGCGC CTGGCAGCGG CTTGATCTGC CGGTCGCAGC GGGGCGCGCA
CAACGCGCCT GGGTCTGGGG TCCGGCGCCG CGTCTGGCGC GCAGCGAATC GTATGTCCAG
TCCGAAACCG GTCTGCGTCA GGTGCTCTAC TTCGACAAAG GACGCATGGA GATCAACAAT
CCGCGCCAGG CGCGCACGAT GCCTTCCTTC GTGACGGCTG GCTTGCTGGT TGCGGAAATG
GTCACGGGGC GGGTGCAGGT TGGCGATAAC GAATATGTGC CGCACCAGCC TGCGATGCTT
CCTGTTGCCG GAGACCTCGA TGATGCCCGC GCGCCTGCCT ATGCGGCGTT CGCTGGTCTT
CTGTCGCCGG TGGCCGAACG TGCCGGTGTG CCTGTGACCG AGATGCTGCT GGCGGATGGC
AGTGTGCAAT CATCGAGCCA GCCGGTGCGA CCGGAGACGC GGATGGTGCG CTTTGTTGCC
GAGACAGGAC ACAACATTCC GCGCGTCTTC TGGGATTATT TGACAGCGCC GGGTATTGTG
TACGACAATG GAGTATATCG TACCAGTCGC ATGATGGACT GGGTTGCGGT TGTCGGGTAT
CCGATCAGCG AAGCGTACTG GGTGCGCACG CGAGTCGGCG GCGTCGAGCG CGATGTGCTG
GTGCAGTTGT TCGAGCGCCG AGTGCTGACG TATACGCCGG ATGAGCAACC TGCCTGGCGT
GTGCAGATGG GGAATGTCGG TCAGCACTAC TATCTCTGGC GCTATGGCGG TCCCTTGCCG
TAG
 
Protein sequence
MARLHLRSLV ACLFIFFVAL SAMATPARLA AAPQDFRWEP ASRAYTVTNQ TPNNTVLVVN 
DFRLRNDDTV AATFTISFPE RPSGWQVSTT IAQPIAVNQA TTSAVIPIRI IIPPNTPNGV
RTVTVRATRT DVTPNLTAEA VIQVTLTAPA PGTPPVSACP ELSDPGNNFD GASLILVDRA
ERHGICAIGD EDWYKFGAVA GKYYSIDIPE MDAGLDLSLE LYDSNRRLID SNDDFPFRGG
TQTLTDTRPL IQSFRAPTDG FFYVRVRDTL GIGGSDLSYT IIVRGESYGP FPPFVSSLCN
DMYEQDGLPE LARQINQNET QRGRLLCPNG DADWVKFFAL AGYTYYLYTN TRPYAPPDAN
GILPGADTLL FLFGRDAITL IDSNNNIEGG ATLDSLVRFT PAADGIYYAQ VKNVGDIGGM
FIRYDLTLKA CPVEQPACAP PPDILPALPP AAVEVVPLAQ DVAPLIEAHL APQVAPELVA
DAGGEMIVAL AGAQPIARQI DPAFTGAWQR LDLPVAAGRA QRAWVWGPAP RLARSESYVQ
SETGLRQVLY FDKGRMEINN PRQARTMPSF VTAGLLVAEM VTGRVQVGDN EYVPHQPAML
PVAGDLDDAR APAYAAFAGL LSPVAERAGV PVTEMLLADG SVQSSSQPVR PETRMVRFVA
ETGHNIPRVF WDYLTAPGIV YDNGVYRTSR MMDWVAVVGY PISEAYWVRT RVGGVERDVL
VQLFERRVLT YTPDEQPAWR VQMGNVGQHY YLWRYGGPLP