Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1534 |
Symbol | |
ID | 5539010 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 1956805 |
End bp | 1958178 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640893672 |
Product | PUCC protein |
Protein accession | YP_001431645 |
Protein GI | 156741516 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2211] Na+/melibiose symporter and related transporters |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00123663 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.002835 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATCTGC TGCGCACAAT CGGTCGGTTC TTGCTGGGCG CGCTGAAGGT GTTGCGTCTG GCGCTGCCAA AACTGGGCGT TGGCTGGATG TTTGCCCTGC TCACCAGCAA CTTCAATCGC GTGTCGATCG TTGAACTGGG GGTTATGGCC GTCATCGTGA CAACGATGAT CGGCCTGCAC CATTTCCTGT CGCCATTCCA GGTGGTCTGG GGGCGCATCG CCGACAATCA TCCGGTCTTC GGGCTGCGCC GCACGCCGTA CCTGCTCCTC GGCGCAACGG TTGCCAGCCT GGTGTTCCTG GCATTGCCAT CGGTTGCACT GGCGATGGGT GAAGGGTCGG TGCTGGCGAT TGTCGCCGGG TATGCGCTTC TCATTATCTT TGGCATCAGT ATTGCAGCCA TGGGCGACTG CCACCATGCG CTGATTGCCG AGGTGACCAA CCCAAAGACG CGCGGCGGCG TGATTGCGGT GGTCTGGACA TTCACCATCA TGAGCACGAT TATCGCTGCA ACGGTCATCA AGGCGCGCAT GCCAGCGTAT ACGCCTGAGT CGATGCAGGC GCTCTACAAT CTGACGCCGC TGGTGGTGAT CGGTGCGACG CTGCTCGGCG TGCTCGGTAT CGAAAGGCGT CTGAGCCGCC AGGAACTGGC GGTCGCCCTC GAACGCGCAC GCGCTGCTGC GCCTCCGGGC AACCCGCTGA GCGCAGCGTT CGGTCTGCTG CGCCAGAACC CGCAGGTGCG CGCGTTCTTC GGGTTTGTGT TCCTTTCGAT CATCGGTATC TTCCTGCAAG ACTCGATCCT GGAGGTCTTT GGCGCTGAGG TCTTCCACAT GACCTTGAAG GAGACGACGA CATTTACGCA AACGTGGGGC GGCGGTGTGC TCGGCGGTAT GCTGATCATG GGTCTGCTCA GCGCCATCTT CCCGATCGGC AAGAAACTGA TCGCGCTGAT CGGCGGCGTC GGCACCGCCT TTGGTCTCGG ATTGCTGGCG GTCTGTGCGC TTACCGAACA GCGCGCGTTG CTCAATCCGG CAATTATGCT GATGGGCGTC AGCACCGGGC TGTACAACGT CGGTGCGCTG TCGCTGATGA TGGATATGAC CGTCGAAGGC GCCACGGGTC TGTACATGGG CATGTGGGGC ATGGCGCAGG CATTCGGCAC GGCAACGGCG AATATTCTGG CAGGTGCGCT CCACACGGTG CTGATCGAGG CGCAGGCGCT TAGCCAGACG CTGGGGTATG GCGTGATCTT CGGTCTGGAA GCAGTGCTGA TGATTGTCGG CATTGCGCTG CTGTCCGGCG TCAGCGTCGA AGCCTTCCGT GGTTTGACGC GCGCCGACAT TACGCGCGCC ATGGAAGCGG GCGCGGTCGC TTGA
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Protein sequence | MNLLRTIGRF LLGALKVLRL ALPKLGVGWM FALLTSNFNR VSIVELGVMA VIVTTMIGLH HFLSPFQVVW GRIADNHPVF GLRRTPYLLL GATVASLVFL ALPSVALAMG EGSVLAIVAG YALLIIFGIS IAAMGDCHHA LIAEVTNPKT RGGVIAVVWT FTIMSTIIAA TVIKARMPAY TPESMQALYN LTPLVVIGAT LLGVLGIERR LSRQELAVAL ERARAAAPPG NPLSAAFGLL RQNPQVRAFF GFVFLSIIGI FLQDSILEVF GAEVFHMTLK ETTTFTQTWG GGVLGGMLIM GLLSAIFPIG KKLIALIGGV GTAFGLGLLA VCALTEQRAL LNPAIMLMGV STGLYNVGAL SLMMDMTVEG ATGLYMGMWG MAQAFGTATA NILAGALHTV LIEAQALSQT LGYGVIFGLE AVLMIVGIAL LSGVSVEAFR GLTRADITRA MEAGAVA
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