Gene Rcas_1520 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1520 
Symbol 
ID5538996 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1939902 
End bp1940687 
Gene Length786 bp 
Protein Length261 aa 
Translation table11 
GC content60% 
IMG OID640893658 
Producthypothetical protein 
Protein accessionYP_001431631 
Protein GI156741502 
COG category[S] Function unknown 
COG ID[COG4636] Uncharacterized protein conserved in cyanobacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.110236 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGACGC TGAAACGACC CGTTCGCCCC CGGCGCGTCC ACTACCCGGA GAGCGACGGC 
AAACCCATGG GTGAGACCGA TCTGCACCGC GACTTGATGC CCGATCTCAT CTTTGCTCTG
AAGTGGTTCC TGAGTTCGAC CATCGCCTAC GTGGCGGGCA ATCTGTTCAT TTACTACGAA
GAAGGCAACC CGCGCGCCGT CGTTGCGCCT GATGTGTTCG TCATCATGGG TGTGCCGCAG
CGCCGTCGTC AGATCTTCCA AACCTGGAAG GAAGGCGGGC GTGTGCCGGA TGTAGTCATC
GAGATTACCT CAAAACGCAC GCAGAAGGAT GATCGTGAAC GCAAACCGGC GATCTACGCT
GCGCTGGGAG TGCCGGAGTA TTTTATCTTT GATCCCAACG GCGACTATCT CGATCCACAG
CTTCAGGGTT TCCGGCTGGT CAATGGGATG TATGAACGTA TGCAGACGTT TCCGTTGAGG
AGCGACGCCC TGAACCTGGA ACTGCGCCAG GAAGACTCGA TCCTGCGGCT CTATAACTCG
CAAACCGGTG AGCGGTTGCC AACATCGGAC GAAGAAGTGC TGGCGCGGCG TGCAGCGGAA
GCGGCGCGTC TGGCTGCCGA ACGCGAGTTG CTCGCAGAAA CGCAAGCGCG TCTGGCGGCG
GAGGCGCATG CCGCAAAACT GGAAGCCCGC GCCGCAAAAT TGGAGGCAGA AGTTGCCCGT
TTGCGCGCTG CACTGGCGAA GCGCGCGAAA TCGTCAACCG AACCACAGGC GCCAGAGGAG
GCGTAG
 
Protein sequence
MTTLKRPVRP RRVHYPESDG KPMGETDLHR DLMPDLIFAL KWFLSSTIAY VAGNLFIYYE 
EGNPRAVVAP DVFVIMGVPQ RRRQIFQTWK EGGRVPDVVI EITSKRTQKD DRERKPAIYA
ALGVPEYFIF DPNGDYLDPQ LQGFRLVNGM YERMQTFPLR SDALNLELRQ EDSILRLYNS
QTGERLPTSD EEVLARRAAE AARLAAEREL LAETQARLAA EAHAAKLEAR AAKLEAEVAR
LRAALAKRAK SSTEPQAPEE A