| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1417 |
|---|
| Symbol | |
|---|
| ID | 5538890 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 1811833 |
|---|
| End bp | 1812762 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640893554 |
|---|
| Product | HEAT repeat-containing PBS lyase |
|---|
| Protein accession | YP_001431530 |
|---|
| Protein GI | 156741401 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1413] FOG: HEAT repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.970236 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTTG CCGCTCATCT GCGGACCCTT GCAGCGCGCG AGCATTTGTC GATGCGTGAA
CTGCGCTCCC TCTCCGGACT CGACCCGCAC GACCACGCAA CGGTCTGGAC GGAGTGGCAG
CGCATTCCCG TCGGGCGACG CATCGAAATC GCCCACGCGA TGGTCGAACT CGCTGAGGAC
AATATCGACC TCGATTTCAC GGTGATGTTC CAGTGGTTGC TCGACGATGC CGATGCGACG
GTTCGCGCCA GCGCCATCGA AGGGTTGTGG GAGTGCGACG GTCTGCCGGT TCTGCGGCGA
ATGCTGGCGC TCCTCCACGA CCCTGCCGGG CAGGTGCGCG CCGCAGCGGC TATGGCGCTC
GGGCGCTTCG CCTACATGGC GGAAATCGAA GAGATCGATG CGGTGTATGG TCAGCAGGTG
CACGATGCGT TGCTGGCGCT GATCCGCGAT CCGGCGCAAC CGACCGAGGT GCGTCGCCGC
GCTATCGAGA GCGCTGGCTA TTTCGCCGCC AGCGATGCAG TGCAACAGCA GATCGAACTG
GCATATGCCA GTTCTGATCA ATTGATGCGC GAAAGCGCTC TTACAGCAAT GGGGCGTTCG
ATGCTGCCAC GCTGGCTCCC GATTGTCAGC CGCGAACTCG AAAGCCCTTC CCCGGCGTTG
CGCTACGAAG CCGCGCGCGC CGCCGGCGAA ATGGCAGACC TGGCGCGTTC ACTGGTGGCG
CGTGTCGTTC GTCTCTGCAA CGATGCCGAC ACTGAGGTGG CGCTGGCGGC GATCTGGGCG
CTCGGTCAGA TCGGCGGCGA AACGGCGCGC CGCACCCTGC AACGCATCAG CGGTAGCGAC
GATGAAGCGC GCAGCCAGGC AGCCGCCGAA GCGCTCGATG AATTGACGCT CGAAGAAGGT
TTCTCCGGCG GCGACTGGCG CAATAACTAG
|
|---|
| Protein sequence | MDLAAHLRTL AAREHLSMRE LRSLSGLDPH DHATVWTEWQ RIPVGRRIEI AHAMVELAED
NIDLDFTVMF QWLLDDADAT VRASAIEGLW ECDGLPVLRR MLALLHDPAG QVRAAAAMAL
GRFAYMAEIE EIDAVYGQQV HDALLALIRD PAQPTEVRRR AIESAGYFAA SDAVQQQIEL
AYASSDQLMR ESALTAMGRS MLPRWLPIVS RELESPSPAL RYEAARAAGE MADLARSLVA
RVVRLCNDAD TEVALAAIWA LGQIGGETAR RTLQRISGSD DEARSQAAAE ALDELTLEEG
FSGGDWRNN
|
|---|
| |