| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1395 |
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| Symbol | |
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| ID | 5538868 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 1784017 |
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| End bp | 1785867 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640893532 |
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| Product | type IV secretory pathway VirB4 components-like protein |
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| Protein accession | YP_001431508 |
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| Protein GI | 156741379 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0290868 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACTCC GAGATGCGCT TGCCCGACCG ATCATCGAGC CGGTACGCCG CCGCACCGCC
AACGCAGCGT TTCTTTCCGG CACCACAACG CTGACCACGC TGCTCGCGCC CGACGGCATT
GATCGGCGCT GGAGCCATAT GATCCAGGTG GGCGATTCCT TTATCACCAC ACTGGAAGTG
CGCGCATTCC CGCCGGTGCT CACACTGGCG TGGCTCGACG ATCCCACATT GGGGCTGGAC
AGTTCCGGCA TTACGGTTCA TCAGCGCCTC GTGCCGGTTC CCGATGCGCT TGCGCGCCGC
TGGCTGGCGC GCAGCGAAGA CGCGGCGCTT GGCACACTGG CCGGCGACGC ACAGGCAGGC
ACGCATTTCG ACGCTGAAGC GCAGCAGGGT ATCGAAGCAG CAGCGGCGCT GCGCCACGAT
CTCACGGCAG GAACAGACCG CCTGTTCCAG GTAGCGATCA CCATCACCAT AGCAGCGGCA
ACCCCCGATG AACTTGCAGC CCGTATTGAT CGGGTGCGGC TCGCTGCGGC ACAGCAGGGA
ATCCTGCTCG GCAGCATGCA GTTTCAACAG TGGGAAGGGT ATCTCGATGC GTTGCCGCTG
GGACGCTCGC CGTCTGGATT GGTGCACGAC GCCAGCGGGC GCGCCGCTGC GATGGGCATA
CCCACAGCGT CGCCAGGATT GACGCGACGC GGCGGATTGC CGATAGTCTG GGGAGAACAT
CCGCGCAGCG GCGCGCCCGT CGTCTATGAC CGCTGGCAGG CGACGAACCC GCACATGCTC
ATTGTCGCCG AGTCGGGAAG CGGAAAAACA TACACTATGG GCGGGTTGCT GGCGCAGGAA
CTGGCGCTCG GCGAGGATGC GCTGCTCATT CTCGATCCAA AGCGTCAGGA GTACCGTCCG
TTGACGACTG CGCTCGGCGG CGCCTACATT TCGCTGTCGA GTCGCGCCGG CTACCACATT
AATCCGCTGG AACTGCCGCC ACTCGCGCCC GAACGCGCGC GCGCCGTCGC GGCGCTGGAA
GAAGATCTGC TGGCGCAGCG GATCAGTGTG ATCAAAGCGT TGATCATCCG CGAATTGAAG
GCGCAGGGCA CGCACATCGA CGCCACCGGC GCAGCCGCGA TTCAGGACGC CATTGCCGCA
GCCTATGCCG AACGCGGCAT CAGCAGCGAT CCGCGCACAT TCGGGCAGCC AATGCCCACC
TTCAGCGATG TGCAGCAGCA TCTGACGGCG ATCACACCCG ACCTGGCGCG CGCTATGACA
CTGTTCACAC GCGGCATCAT CGGCGACCTT TTCAACCATC CATCGAACGT ACCGACCGAC
AACCCGTTGC TGGCGATTGA CCTCTGGACC TTGCTCCAGA GCAATGATGA AACCCTTGCC
CGATTGTTGC CGGTGATCGT GATGGACTTT TTCGTGACCA CGGCGATCAA CCGTCCAACC
GGGCGACGCA GCCATCTGGT GCTCGACGAA GCGCATGCGC TGCTACACTC AGACGTGGGC
GCGCGCACGT TGCAGATGAT TTTCCGCATC GGACGTAGCC TTCAGTTCAA AGCGACCGTC
ATCACTCAGA GCCTCGACGA CCTGGATGAA AGCGAACAAA CGCGCGTGTT GCTGGAAAAT
GCGCGCACCA AACTCATCCT GGGACTGAAC CAGGACTCCG ATGCGGTCAA CCGGGCAGCC
GCCATTCTGC GCCTGAATGA AGAGGAAGCG GCGTATCTGG CGACGTGCCG GATCGAGCGT
GGCATCGGCG CAACGGCATT GCTGCTGGCT GATGGCGAAC GCACACCGTT GTTCATTCCA
AGATGGCCCG ACACAATCCA TCGGATTGTG ACTGGCGCAG GGAGCGACTG A
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| Protein sequence | MALRDALARP IIEPVRRRTA NAAFLSGTTT LTTLLAPDGI DRRWSHMIQV GDSFITTLEV
RAFPPVLTLA WLDDPTLGLD SSGITVHQRL VPVPDALARR WLARSEDAAL GTLAGDAQAG
THFDAEAQQG IEAAAALRHD LTAGTDRLFQ VAITITIAAA TPDELAARID RVRLAAAQQG
ILLGSMQFQQ WEGYLDALPL GRSPSGLVHD ASGRAAAMGI PTASPGLTRR GGLPIVWGEH
PRSGAPVVYD RWQATNPHML IVAESGSGKT YTMGGLLAQE LALGEDALLI LDPKRQEYRP
LTTALGGAYI SLSSRAGYHI NPLELPPLAP ERARAVAALE EDLLAQRISV IKALIIRELK
AQGTHIDATG AAAIQDAIAA AYAERGISSD PRTFGQPMPT FSDVQQHLTA ITPDLARAMT
LFTRGIIGDL FNHPSNVPTD NPLLAIDLWT LLQSNDETLA RLLPVIVMDF FVTTAINRPT
GRRSHLVLDE AHALLHSDVG ARTLQMIFRI GRSLQFKATV ITQSLDDLDE SEQTRVLLEN
ARTKLILGLN QDSDAVNRAA AILRLNEEEA AYLATCRIER GIGATALLLA DGERTPLFIP
RWPDTIHRIV TGAGSD
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