| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1372 |
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| Symbol | |
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| ID | 5538844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1754505 |
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| End bp | 1756472 |
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| Gene Length | 1968 bp |
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| Protein Length | 655 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640893509 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001431486 |
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| Protein GI | 156741357 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00377] anti-anti-sigma factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACAA ACACTCCATC CGACTCGACG ATGAAGGCTG AACACGAGCA TGTGTATGAG
CGGGTTGCAC AGTTGGAGCG CGAACTGGCG CGCTTCCGCG CGATCATCGA AGACACCGAT
CTGCTCATTA CCGAAGTGGA CGCAAACGGT ATCTTTACCT ACGTGAACCC GGCTGCGCGG
TCTGTCTTTG GCTATGCGCC GGAGGAGTGC ATTGGCCGAT CATCGCTTGA GTTTGTGCAT
CCAGATGATC TTGAAGAGAC CCAGCGCGTA TTCGTTGAAT GGGTGCAACG CCACGAACGC
GGCGGGGTGA TCGAAAACCG TGTGATCCAT CGCAACGGTT CGTTCTCGCA TCTGCTGTGG
TCGATCACGC TGCACTACGA TGATCAGGGG CAGGTGCAGC GCGCCACCTC GATTGCCCAC
GATATTGGTG CGCTTCATCA ACTGCGCAGC GAACTGCGCG AAAGCCGCAC GATGCTGCAA
CTGGTGATCG ACAACCTGCC GCAGGCGATC TTCTGGAAGG ATCGAGAGTT GCGTTTCCTG
GGGGGAAACC AGCGCCTCCT GAGCGATGCC GGGTTGACCT CAGTCGATGA CATTATCGGC
AAGACTGATT TCGATATGCC ATGGAAGGAT CATGCAGCGG CGTATCAGGC GGACGACCGC
GATGTGATCG AGCATGGTCC GAAACTGAAC ATTGAAGAAA TGCTGACCCG CAGCGATGGT
TCGACGATCT GGCTGCGCAC CAATAAGGTT CCTCTGCGTC GGGATGGTGA GATTGTCGGC
GTCCTGGGCA TGTACGAAGA CGTTACCGCA CTAAAGCGGC AGGAAGATGA ACTGCGCACC
TTCAAGTTGC TGGTGGAGAA CGCGCCCGAT GGGATTGCCA TTGCCGACAC GAATCTGACG
CTGACCTACG CCAACCCTGC GCTCGCTGCA ATGCTTGGAT ATTCCAGCCT GGTTGGGATG
ACCGTTCCTA TGATCACCCA TCCTGATGAT CTGGAGAAGT TGAGCGCTAT TGCCCAACAG
GTAACGCAGG GCGGCGCGCC GCGTGAGATG ATCCGCTATC TGCACAGCAA CGGTTCGATT
GTCACCGTGC AAGCGTCGGC ATTGGCGTTG TACGACGGGC ATCGCAACCT GATCGGCTAT
GCGTCGATCA ATCGCGACAT CACCGAACAA CTCCAGGCGG AAGAAAGCCT GCGCGCCAGT
GAACAGCGTA ATCGCGCGTT GCTCAATGCT ATCCCCGATC TCATGTTCCT GCTCAGCGCC
GATGGCGTCT TTCTGGACTA CAAAACGGAT AGCAGCGGCG ACCTCATTCT TCCGCCCGAA
GCGTTTCTCA ACCGGAACGT CGCAGACGTT CTGCCGCCGC ATCTGGCGGA ACAGGTGCTG
ACGCACATGG AGGCGCTCAA GCGCACGCAC GAGATGCAAA CCTATCAGTA TCAGATTCTG
ATCAACGATC AGGTCCGCGA CTTTGAAGCG CGTATGGTGT TCAGCAACGA CGATATTCTT
GTGTTATCGC GCGATATGAC GAAGCAGCGA CGCGCCGAGC GTGAGCGGCA GGCGATGCAA
GAGCAGATCA TTCAGGCGCA GCAGGCGGCG TTGCGCGAAC TGAGCACGCC ACTCATGCCG
ATTGCCGATG GGGTGGTGGC GATGCCGATC ATTGGCACGA TTGACACAAT GCGCGCACAA
CAGATCATGG AGGCGCTGCT CCAGGGAATC GCCGATCACA GCGCCGATAT TGCTATCCTC
GACATCACCG GCGTCAAAGT TGTGGATACA CAGGTTGCCG GAGCGCTCAT CCGTGCAGCA
CAGGCGGCGC GTATGCTCGG CGCGCGCGTG GTGCTGACCG GCATCAGCCC GGAGATCGCG
CAGACCCTCG TCCACATTGG CGCTGAAATG CGTGAGATGG TCGCCAAGCC AACGCTGCAA
CAGGGGATTG CCTACGCCCT TGAGCAACGG GTGGGGCATC ATCAATGA
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| Protein sequence | MSTNTPSDST MKAEHEHVYE RVAQLERELA RFRAIIEDTD LLITEVDANG IFTYVNPAAR
SVFGYAPEEC IGRSSLEFVH PDDLEETQRV FVEWVQRHER GGVIENRVIH RNGSFSHLLW
SITLHYDDQG QVQRATSIAH DIGALHQLRS ELRESRTMLQ LVIDNLPQAI FWKDRELRFL
GGNQRLLSDA GLTSVDDIIG KTDFDMPWKD HAAAYQADDR DVIEHGPKLN IEEMLTRSDG
STIWLRTNKV PLRRDGEIVG VLGMYEDVTA LKRQEDELRT FKLLVENAPD GIAIADTNLT
LTYANPALAA MLGYSSLVGM TVPMITHPDD LEKLSAIAQQ VTQGGAPREM IRYLHSNGSI
VTVQASALAL YDGHRNLIGY ASINRDITEQ LQAEESLRAS EQRNRALLNA IPDLMFLLSA
DGVFLDYKTD SSGDLILPPE AFLNRNVADV LPPHLAEQVL THMEALKRTH EMQTYQYQIL
INDQVRDFEA RMVFSNDDIL VLSRDMTKQR RAERERQAMQ EQIIQAQQAA LRELSTPLMP
IADGVVAMPI IGTIDTMRAQ QIMEALLQGI ADHSADIAIL DITGVKVVDT QVAGALIRAA
QAARMLGARV VLTGISPEIA QTLVHIGAEM REMVAKPTLQ QGIAYALEQR VGHHQ
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