| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1360 |
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| Symbol | |
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| ID | 5538832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 1738511 |
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| End bp | 1740442 |
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| Gene Length | 1932 bp |
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| Protein Length | 643 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640893497 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_001431474 |
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| Protein GI | 156741345 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCAAC GACTCAAGAA TCGGCACTTT TTGATCTTCG ATGTGCTGCT CGTGCCGCTG
GCAATCTACG TCAGCTTCGT GCTGCGCCTC GAAACGTTCG ATCTCAAGAC GTACTGGGTG
GCATGTGCGC ACTTCTGCCT GATGGCAGTC ATCGTCACTC CACTGATATT TCGCGCATTC
GGCGTCTATC GCCGCTACTG GCGCTACGCT TCGTTCGAGG AAGTGCTGCT GCTCTGCAGT
GCAACCTCGC TGGCAATGGG AGCCACTGCG ATCCTCCTCA CACTGCTCGA CATTGTGACG
CCGGTGATAG CGACAGTCCC GCGTTCCATT CCATTCATCG TTCCGCCAAT CGCCGCATCG
CTCGTCAGCA TTCCACGATT GCTGGTACGC ATCGGCGCAG CGCGCGAGCG CCGCCGCCGC
GCCACCGACC GACCTGCGCC TGTGCTGATC ATGGGGGCCG GCGATGCTGC ATCCATTATT
GTGCGAGAGA TTCAGCGCAA CCCCAGGCTC GGCATGGAGG TTGTCGGGTT GCTGGATGAC
GATCCGACGA AGCGCGGCTT GCGATTGCAC GGCGTCGAGG TGCTTGGCGA CCGCCATGCC
ATTCCATCGC TGGTAGCGCA ACATAAAGTA CGCCAGGTCA TTATCGCCAT GCCGGGCGCG
CCAGGGAAAG CGGTGCGCGA CATCATGCAC ATCTGTGAGT CTGTCGGAGT TGCCGTGCGC
ATTGTGCCCG GCATGCACGA ACTGATCGAT GGCACGATCA GCGTCAGCAA ACTACGCACC
ATTCAAATCG AAGACTTGCT CCGCCGCGCG CCGGTGCAGA CCGACACAGC CGCAGTGCGC
GGGCTGGTTG CCGGGCGACG CGTGCTGGTG ACCGGCGGCG GCGGCTCGAT TGGAAGCGAA
CTCTGCCGCC AGTTGCTGCG CTTCGGTCCA TCGCATCTCA TCGTTCTCGG ACACGGCGAG
AATAGTGTTT TCGAGATCTG CAATGAACTC GACTGCCTGG CGGAAGCGCA CCTTGATCAA
TCGCCCTGCA TTGTACCGGT CATCGCCGAT ATTCGCGACC TGGAACGGCT GCGCTCCGTT
TTTGCCATCC ACGCACCCGA ACTCGTTTTC CACGCCGCAG CGCACAAACA CGTCCCGCTC
ATGGAAGCGC ATCCGGTTGA AGCCATCAGT AACAATGTCG TTGGAACGCG CAATCTGCTT
GATGTCGCGC TCGAAACCGG CGTCGAACGT TTTGTGATGA TCTCATCGGA CAAAGCAGTC
AATCCGACGA GCGTTATGGG TGCAACCAAG CGCATCGCCG AAATGCTCGT TCTCGACGCC
GCGCGGCGCA GCGGTCGTCC TTTTGTGGCG GTACGTTTCG GCAATGTGCT CGGCAGTCGC
GGGAGTGTCG TGCTGACGTT CAAGCGCCAG ATTGCAGCAG GGGGACCGGT GACCGTCACC
CATCCAGAAA TGCGGCGCTA TTTCATGACC ATTCCCGAAG CCGTGCAACT CGTGCTTCAG
GCATCGGTGC TGGGACGCAC GGGTGAGATC TTTATGCTCG ACATGGGCGA ACCGGTGAAG
GTAGTCGATC TGGCGCGCGA CATGATCCGT CTATCGGGGC TGGAAGTCGG GCGCGACATC
GACATCTGCT TTACGGGGAT GCGCCCCGGC GAGAAACTGT TTGAAGAACT GTTCGCCCGT
GGCGAAGAGT ATCAGCCGAC GGCGCACAGC AAAATCTTCA TCGCGGCAGG CGCCAGCAAC
AACATTCCGC TCGCGCTACG CACCGACGTG ACTTCACTCG AACGGACGGC ATGCACCGGC
AACAATGCCG CCATCCGCCG TCTGCTGCGC GACATTGTAC CGGAATACTG CCCACCGGAG
TTTCTGCCGC CTGTACCGGT CAATGACAGA ACCACGCAGC CCGTGCGGAT TCGTCCGTTG
CAACCGGCAT GA
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| Protein sequence | MMQRLKNRHF LIFDVLLVPL AIYVSFVLRL ETFDLKTYWV ACAHFCLMAV IVTPLIFRAF
GVYRRYWRYA SFEEVLLLCS ATSLAMGATA ILLTLLDIVT PVIATVPRSI PFIVPPIAAS
LVSIPRLLVR IGAARERRRR ATDRPAPVLI MGAGDAASII VREIQRNPRL GMEVVGLLDD
DPTKRGLRLH GVEVLGDRHA IPSLVAQHKV RQVIIAMPGA PGKAVRDIMH ICESVGVAVR
IVPGMHELID GTISVSKLRT IQIEDLLRRA PVQTDTAAVR GLVAGRRVLV TGGGGSIGSE
LCRQLLRFGP SHLIVLGHGE NSVFEICNEL DCLAEAHLDQ SPCIVPVIAD IRDLERLRSV
FAIHAPELVF HAAAHKHVPL MEAHPVEAIS NNVVGTRNLL DVALETGVER FVMISSDKAV
NPTSVMGATK RIAEMLVLDA ARRSGRPFVA VRFGNVLGSR GSVVLTFKRQ IAAGGPVTVT
HPEMRRYFMT IPEAVQLVLQ ASVLGRTGEI FMLDMGEPVK VVDLARDMIR LSGLEVGRDI
DICFTGMRPG EKLFEELFAR GEEYQPTAHS KIFIAAGASN NIPLALRTDV TSLERTACTG
NNAAIRRLLR DIVPEYCPPE FLPPVPVNDR TTQPVRIRPL QPA
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