Gene Rcas_1284 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1284 
Symbol 
ID5538756 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1656310 
End bp1657758 
Gene Length1449 bp 
Protein Length482 aa 
Translation table11 
GC content62% 
IMG OID640893422 
ProductMiaB-like tRNA modifying enzyme YliG 
Protein accessionYP_001431399 
Protein GI156741270 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.323089 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAAAG TTCATATTAT CACCCTTGGG TGCCCCAAAA ATCAGGTCGA TAGCGAGGGT 
ATGAGCGGCA TTCTGGCAGC GCAGGGGCAT ACGCTCGCTG CAAGCGCCGA TGATGCCGAT
GTCGTGATTG TCAATACCTG CTCGTTTATT GCAGCGGCGC GGGAAGAAAC GCTGGCGGTG
CTGCGCGATG TCGCTGCGTG CAAAACGCCC GAGCAGCGCC TGGTGGCTGC CGGTTGTATG
GCGGAAAGTC ATCGCGCAAT CGTTGCAGCC ACGCCAGGAG TCGATGCGAC TCTCGGTACG
CGCGAATGGA CGCGCATTGC TGAGGTGGTT GAGACATTTC AGCCCGCGGC GACGATGGCG
CCGCTCAATG CTGCCTCCGC GCGCGAGATC ATTCCGCTCA CCAGCGCCGG TGTTCCATCT
CCTGCTCCGC ACGACCTGAG CGTGCCAGGC GCCTACGCCG ACTGGCGCAC GGCGCCGATC
CGCCGCCGCG CCGTCGGTCC TTCGGCATAT CTGAAGATTT CCGATGGGTG CAATCTGCGT
TGTGCGTTCT GCACCATTCC GTCGTTCAAG GGCGATATGC GCTCCAAAGC CATAGGGGCG
ATCCTCGGTG AAGCGCAGGA ACTGGCAGCG GCGGGCGTGA AGGAGATTGT GCTGGTGGCG
CAGCATCTGA CCGATTATGG GCGTGATCTG GGACTGAAGG ATGGTCTGGC GATCCTGCTC
GACGAGATCT GCGCTGTGCT GCCGGAGAAT GTCTGGGTGC GCTTGATGTA CGCTTACCCG
CACGGGATCG GTGAGCGCCT GATCGCAACC ATGGCGCGCC ATCCGCAGAT CTGCCATTAT
CTGGATATGC CGCTCCAGCA CGCGCATCCA GAGACGCTGC GCCGGATGCG GCGCCCGCCT
GACACGGATC GCACCCGGCG GTTGATCGAT GACCTGCGCG CGGCAATACC CGACATCGCC
ATTCGCTCGA CGTTCATCGT CGGTTTTCCC GGCGAGACCA ACACTGAGTT TCGGGCGCTG
CTGGCGTTCC TCGAGGATGT GCAGTTTGAT CGGGTCGGCG TGTTCCGCTA TTCACGCGAA
CCGGGAACGC CGGCCGCCGC TTTGCCCGAT CAGTTGGCGC CTCGGATCAT CGAGCGTCGC
TGGCATGAGA TCATGCGGCT TCAGCAGCGA ATCTCGCGCG AACGCAACCG GCGCTGGCTC
GGGCGCGTCG TGCGTGTGCT GGTTGAGGGT CAGGGGCAGA CCGACGATGG GCGGATGTTG
AGCGTCGGTC GGTCGTTCCG TGATGCGCCT GAAGTCGATG GACAGGTGTT GTTCTGGGGC
GCAGCAACTC CTGGCACATT CGTCGATGTG CGCGTGACAC AGGCGCTCGA TTATGACCTG
TGGGGCGATG TCGTCGGCGT GCTCGACGGT GAAGAGAGGA TTGTGAAGTG CATCCAGAGC
GTTGGATAG
 
Protein sequence
MMKVHIITLG CPKNQVDSEG MSGILAAQGH TLAASADDAD VVIVNTCSFI AAAREETLAV 
LRDVAACKTP EQRLVAAGCM AESHRAIVAA TPGVDATLGT REWTRIAEVV ETFQPAATMA
PLNAASAREI IPLTSAGVPS PAPHDLSVPG AYADWRTAPI RRRAVGPSAY LKISDGCNLR
CAFCTIPSFK GDMRSKAIGA ILGEAQELAA AGVKEIVLVA QHLTDYGRDL GLKDGLAILL
DEICAVLPEN VWVRLMYAYP HGIGERLIAT MARHPQICHY LDMPLQHAHP ETLRRMRRPP
DTDRTRRLID DLRAAIPDIA IRSTFIVGFP GETNTEFRAL LAFLEDVQFD RVGVFRYSRE
PGTPAAALPD QLAPRIIERR WHEIMRLQQR ISRERNRRWL GRVVRVLVEG QGQTDDGRML
SVGRSFRDAP EVDGQVLFWG AATPGTFVDV RVTQALDYDL WGDVVGVLDG EERIVKCIQS
VG