Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1237 |
Symbol | |
ID | 5538706 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 1597974 |
End bp | 1599086 |
Gene Length | 1113 bp |
Protein Length | 370 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640893372 |
Product | spermidine/putrescine ABC transporter ATPase subunit |
Protein accession | YP_001431352 |
Protein GI | 156741223 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGTTTC TCGAAATTGT CGGTGTGCGC AAGAGTTTTG GCGCTACGGT AGCGGTCGAG CACTTCGATC TGACCGTTGA ACGCGGCGAA TTCGTTTCGT TTCTGGGACC GTCGGGGTGT GGGAAAACGA CGACGTTGCG CATGGTCGCC GGGTTCGAGA AACCCACCAC AGGGCGAATC ATCATCGATG GCGTCGATGT CACCGATATG CCCCCCAATC GTCGCAATAT CGGCATGGTC TTTCAGTCGT ATGCGCTCTT TCCAAACATG ACCGTCGCTG AGAATATCGG GTTTGGGCTG AAAATTGCGC GCCGTCCGGC GGACGAGATT CGCGCGCGTG TCGAGGAACT TCTGCGGATC ATGCACATGC CAGAGTTCGG GCGACGCTAC CCGTACCAGT TGTCTGGCGG GCAGCAACAG CGCGTCGCGC TGGCGCGGGC GCTGGCGATT CACCCCAAGG TGCTGTTGCT CGATGAGCCG CTCTCGGCGC TCGACGCCAA AATCCGCGCG TCGCTCCGCC AGGAGATCCG CGAGATCCAG CGGCAACTCG GCATTACAAC TATTTACGTC ACCCACGACC AGGAAGAAGC CATGGCGCTC TCCGACCGGA TTGTGGTGAT GAGCCGCGGA CGGGTGGAAC AGATCGGCAC GCCATTCGAG GTCTACAATT TTCCGGCGAC GCGCTTTGTT GCATCGTTCG TCGGCACGCT CAACCTGATC CAGGCGACGG TCGTCGATGC CGCTCTTGGA CTGCTGAGCA TCGAAGGGCG GCCAATCCGC GTTGCGCGTC CGCTCGTGCA GCATCGTCCT GGCGACGCCA TCAGCCTTGC CATCCGCCCC GAATTAATTG CGCTTGATGG GCAAATGAAC GGTGAGGTCA ACCGCCTGAG CGGTATCGTC GAAGATGTGA CGTTTCTCGG TTCGATTGTG CGGGTTCAGG TCCATCTCTC GGCGAACAAA CTGCACCTCG ATCTCTTCAA CAATCCACAG TTGCGCCCAC CACAACCAGG GTCGTCGATC ACGGTACAAT TCGCTCCCGA AGCCTGCCTG GTTCTGGGTG AAGACGGATC ACCCCATCAT TCCATGTCGG CGAGCGCGAC ACAGGCGGCG TGA
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Protein sequence | MAFLEIVGVR KSFGATVAVE HFDLTVERGE FVSFLGPSGC GKTTTLRMVA GFEKPTTGRI IIDGVDVTDM PPNRRNIGMV FQSYALFPNM TVAENIGFGL KIARRPADEI RARVEELLRI MHMPEFGRRY PYQLSGGQQQ RVALARALAI HPKVLLLDEP LSALDAKIRA SLRQEIREIQ RQLGITTIYV THDQEEAMAL SDRIVVMSRG RVEQIGTPFE VYNFPATRFV ASFVGTLNLI QATVVDAALG LLSIEGRPIR VARPLVQHRP GDAISLAIRP ELIALDGQMN GEVNRLSGIV EDVTFLGSIV RVQVHLSANK LHLDLFNNPQ LRPPQPGSSI TVQFAPEACL VLGEDGSPHH SMSASATQAA
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