Gene Rcas_1233 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1233 
Symbol 
ID5538702 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1592815 
End bp1594362 
Gene Length1548 bp 
Protein Length515 aa 
Translation table11 
GC content62% 
IMG OID640893368 
ProductUDP-N-acetylmuramyl-tripeptide synthetase 
Protein accessionYP_001431348 
Protein GI156741219 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0769] UDP-N-acetylmuramyl tripeptide synthase 
TIGRFAM ID[TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGCAC ACCTTCACGA CCTTTTGCGA ACCCTCTGCG ATCCCGCGCA CCTGCCGCGC 
GCCAATCCGG CGATCACTGC CATCGTCTAC GACTCGCGCG CGGTGATGCC CGGCGCATTG
TTCGTGGCAT ACCGCGGTTT TCACACCGAT GGGCATCTCT ACATCCCGCA AGCCATTGAA
CGCGGCGCAG CCGCCGTCGT CTACGAAGAC CCGGCGTGGG ACGGACGCAT ACCGGTTCCG
GCGTTGCGCA CACCCAATGC GCGTGCTGCG CTTGCGCCGC TCGCAGCGGC ATTCTATGGC
TACCCTGGAC GACAGATGCG TGTCGTTGGC ATCACAGGCA CCGACGGAAA AACAACAACG
ACCTTCCTGA CCAGCGTGGC GCTCGAAGCC GGTGGCGCTG TCACCGGGCT GATGGGCACA
GTGGATTTCA AAATCGCCGG GCGCCTGTGG GCGAACGATT CGCGCCAGAG CACGCCGGAA
GCGCCAGAAG TACAGGCGCT GCTGCGCGAT ATGGTGCATG CCGGTTGCGC GTATGCGGTT
GTTGAGGCGA CATCGCATGC GCTCTCGGCG CGCTGGAACC GGCTTGCCGG TTGCGCCTTC
GATATTGCAG TATTGACGAA TGTGACGCAG GAGCACCTGG ATTTTCACGG CACGGTCGAA
CAGTATCGCC GCGATAAGGC GCGCCTGTTC GAGATGCTGG CAGAGTTTCA CGACGATGCT
ACGCCGTTCA AACAACGCAA GATCGCCATT GTGAACGCCG ATGATCCGAA TCATCGCATG
TTCCTCGACG CCGCCCCACC CTATGCCGAA CGATTGACCT ATGCCATCCA CGCCAATGCC
GACGTGTGCG CCCGAAATGT CCGTTCAACC CGTGATGGTC TGATGTTCCG CGTGACAACG
CCGTGGGGCG CTGCCGATGC GCATCTGCGA CTGACCGGCG ATTTCAACGT TTGGAATGCG
CTGGCGGCGC TGACCGTCGC ATGCGCCGAA GGCGTACCGC TCAGTGTATG CCTTGCGGCG
CTCGAACGTG TGCCCGGTGT GCGCGGGCGC ATGGAACGGA TCGAAATGGG GCAACCGTTC
ACCGTGCTAG TCGATTACGC TCACACTCCC GGGGCGTTCG AGAAATTGAT GCGCATTGTG
CGCCCGCTCA CCGATGGGCA ACTGATCGTC GTCTTCGGCA GCGCCGGAGA ACGCGACCGC
GCCAAACGCC CGTTGCAGGG AGAGATTGCC GGGCGCTTCT GCGACCTCGT TGTGCTGACT
GATGAAGACC CGCGGCTTGA AGATCGCGAG GCGATCATTG CCGAAATCGC GGTCGGTGTG
GAAGCAGCCG GCAAACGGAT TGGCGAGACC TGCCTTTGCA TCCCGGATCG CGCCCACGCC
ATTCGCACTG CCTTTGCGCG CGCCCGTCCC GGCGATATTG TCCTGCTCCT GGGCAAAGGT
CACGAAGGGA GCATCATTTA CGGCACAACA CCAATGCCCT GGAACGAAGC GGCAGAAGCG
CGGCGCGCCT TAGCAGAACT CGGTTTTGGT GCGTCGCCTC CATTTTGA
 
Protein sequence
MMAHLHDLLR TLCDPAHLPR ANPAITAIVY DSRAVMPGAL FVAYRGFHTD GHLYIPQAIE 
RGAAAVVYED PAWDGRIPVP ALRTPNARAA LAPLAAAFYG YPGRQMRVVG ITGTDGKTTT
TFLTSVALEA GGAVTGLMGT VDFKIAGRLW ANDSRQSTPE APEVQALLRD MVHAGCAYAV
VEATSHALSA RWNRLAGCAF DIAVLTNVTQ EHLDFHGTVE QYRRDKARLF EMLAEFHDDA
TPFKQRKIAI VNADDPNHRM FLDAAPPYAE RLTYAIHANA DVCARNVRST RDGLMFRVTT
PWGAADAHLR LTGDFNVWNA LAALTVACAE GVPLSVCLAA LERVPGVRGR MERIEMGQPF
TVLVDYAHTP GAFEKLMRIV RPLTDGQLIV VFGSAGERDR AKRPLQGEIA GRFCDLVVLT
DEDPRLEDRE AIIAEIAVGV EAAGKRIGET CLCIPDRAHA IRTAFARARP GDIVLLLGKG
HEGSIIYGTT PMPWNEAAEA RRALAELGFG ASPPF