| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1203 |
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| Symbol | |
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| ID | 5538669 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 1555648 |
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| End bp | 1557513 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640893335 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001431318 |
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| Protein GI | 156741189 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[V] Defense mechanisms |
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| COG ID | [COG0845] Membrane-fusion protein
[COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTACCA CTCCTGCGCG TCGCTGGCCC GGTCGGCGCG CAATCGTCAC CGCAATCGGA
CTTGTGCTCA TCGTGGCAGC GTGCGCTGCG GGCATCTTTC TCTTTCGCGG CGGGCAACCG
GCGCCGGCGC GCAGTTATGC GTTGGTCAAT CCGCGGGTTG ACACGCTGAT TGCGACAGTC
AACGCGACGG GACAGATCGC TCCGGTTCAG ACGGTCAATC TCAGTTTTGC GGTGACCGGG
CGAGTCGCTG AGGTGCTGGT GCGCCCCGGC GATGTGGTGG AAAAGGGGCA ACCACTGGCG
CGACTCGATA CGCGCGAACT GGAACTGCGT CTGACACAGG CGGAGGCGCA ACTGGCGCAG
GTGCAGGCGA ACCTCGACCG CCTGCTCGCC GGTCCTTCAT CGGCTGAGAT TGCTGCCGCC
GAAGCGCAAC TCGCACAGGC TGCGGGCCAG TTGCGGCAGG TGGAAGGGAG CGTCACAACT
GCGGATATGC GCGCTGCCGA GGAACAACTG CGGCAGGCGG AAGCGCGCCT CAATCAGTTG
CTCAACGGTC CGCGCGAATC GGACGTTCAG ACCGCAGAAG CGCGCATCCG CGAGGCCGAA
CTGAATCTGG AACGTCAGCG CGCCCAACTC TCCGCTGCGA AAACCAACGC ACAGATTCAA
CTGGAGCAAG CGGTCAACCA GTTGACCCAG GCACAATCGC GCTACTCAAC GGCGAAACAG
AACTGGGAGT ATGTGCGCGA AACCGGCGCC GACCCGATTG TGCGCACCGT AGCCGATCCA
AACCGACCGG GACAGACCCG CCCGAACATT CTGAACGACT CGCAACGCCA GCAGTACTAC
GACGCCTTCG TTCAGGCGGA AGCGGCGCTG CGCAGCGCTG AAAACGCTGT TGCTCAGGCG
CAGGTGAATT ATGACAACGC GCGTCTGGCA GAGGCGAACG GAGTCGAACT CGCCGAAGGT
CAACTGGACG TCGCGCGCGC GAACCGTGAT CTCCTTTTCG CCACCCCTGA ACCAGACGTG
CTCGCAGCGG CGCGCGCGCA GGTTGCCAGC GCCCGCGCTG CGCTCGACCG AATGCGCGGC
GATCAGCGTG GGGGTCAGCT TGAAGCAGCG CGCGCCGCCT TCGAGGCAGC AAAGGCAAAC
CTGGAACGAT TGCGCGCCGA TCCGCGCCCG GCCGACCTGG CAGCTGCCCG CGCACAGGTC
GATGGCGCGC GCGCCGCGCG CGATCTGGCG CGACTGACCC TTGACGAAGC GGTGCTCAAA
GCGCCGTTCA GCGGAGTTGT TGCCGAGGTC AACCTGAAAG TAGGGGAAGC GCCATCGCCG
GGACGTCCTG CGATTGTGCT CGCCAATCTC GAGCGTTTTT ATGTCGATGT GACGGTGGAC
GAGATCGACA TTACGCGGGT CAGCGTCGGT CAACCGGTGA CGCTGACGCT CGATGCGTTG
CCAGAGGTGA CCCTGGCAGC AACAGTCGAG ACGATTGGAC CACTCGCGCT GCCGCAGGCG
GCGGTCACTT CGTACCAGGT GCGAATCGGC ATTCCCAACA CCGACCCACG GGTGCGCGCC
GGCATGTCGG TCGGCGCAGA CATTGTGGTC GCGGAGCGTG AGAATGCGCT GCTGGTGCCC
CGCCGCGCGG TGCGCAACGA TCGCGGGCGC CTGATCGTCG ATGTGGTGCG CGATCCGGGA
TTGTGTGCGA CGCCGCCAGA GCAGCGCCCC GCGCGTCCCG ATCTCGAAGC ACGGGAAGTG
ACCGTCGGGC TGAGCAACGA CCAGGCTATC GAAATCCTCA GCGGTCTCGA TCCGCAGGTC
TGCGTCTATG TCGAAGGCGT CGATCAACGC TTTACGTTCT TCACCGGTCC GCCTCGCGCG
CGGTAA
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| Protein sequence | MTTTPARRWP GRRAIVTAIG LVLIVAACAA GIFLFRGGQP APARSYALVN PRVDTLIATV
NATGQIAPVQ TVNLSFAVTG RVAEVLVRPG DVVEKGQPLA RLDTRELELR LTQAEAQLAQ
VQANLDRLLA GPSSAEIAAA EAQLAQAAGQ LRQVEGSVTT ADMRAAEEQL RQAEARLNQL
LNGPRESDVQ TAEARIREAE LNLERQRAQL SAAKTNAQIQ LEQAVNQLTQ AQSRYSTAKQ
NWEYVRETGA DPIVRTVADP NRPGQTRPNI LNDSQRQQYY DAFVQAEAAL RSAENAVAQA
QVNYDNARLA EANGVELAEG QLDVARANRD LLFATPEPDV LAAARAQVAS ARAALDRMRG
DQRGGQLEAA RAAFEAAKAN LERLRADPRP ADLAAARAQV DGARAARDLA RLTLDEAVLK
APFSGVVAEV NLKVGEAPSP GRPAIVLANL ERFYVDVTVD EIDITRVSVG QPVTLTLDAL
PEVTLAATVE TIGPLALPQA AVTSYQVRIG IPNTDPRVRA GMSVGADIVV AERENALLVP
RRAVRNDRGR LIVDVVRDPG LCATPPEQRP ARPDLEAREV TVGLSNDQAI EILSGLDPQV
CVYVEGVDQR FTFFTGPPRA R
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