Gene Rcas_1200 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1200 
Symbol 
ID5538666 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1550416 
End bp1552893 
Gene Length2478 bp 
Protein Length825 aa 
Translation table11 
GC content61% 
IMG OID640893332 
ProductATPase 
Protein accessionYP_001431315 
Protein GI156741186 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0542] ATPases with chaperone activity, ATP-binding subunit 
TIGRFAM ID[TIGR03346] ATP-dependent chaperone ClpB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0973112 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACTCG AACGGTTTAC CGAGAAAGCG CAGGAAGCGT TTCAGGACGC GCAGGAAATC 
ATGCACGACC AGCATCACAC GCAGCTGGAC GTAGAGCATA TTTTCCTGGC GATGCTGCGG
CAGCGCGACG GGCTGACGGC GCGCGCGATT GCGCGACTCG GTGTCGATGC CGACATGGTT
GCGCGGCGCG TCGAGCACGA ACTCGAGAAG TCGCCAAAGG TGTATGGTCA GTACGGCTAC
GGCAATCAGG TCTACATCAC GCCACGCACC CAGCGCCTGG TCAAGCGCGC TGAAGAAGAA
GCCAACCGCC TGAATGATCA GTATGTCGGC ATTGAGCACC TATTGATCGC CATCAGCGGT
GAGCGTGAAG GCGCGTCATC GCGCATTCTG AACAGTTTTG GCATCGATCA GGAACGTATC
TATCAGGCGC TGATGGACAT CCGCGGTCAC CAGCGCGCCG ACAATCCCGG CGCCGAGGCG
CGCTACGAGG CGCTCTCGAA ATATTCCATC GACCTGACCG ACATGGCGGC GCAAGGGAAA
CTCGATCCGG TCATTGGGCG CGAGGCGGAG ATTACCCGCG TCATCCGCAT TCTTTGCCGC
CGCACAAAGA ATAACCCCGT GCTCGTCGGC GAAACCGGCG TTGGCAAAAC CGCCATTGCC
GAAGGGTTGG CGCAACGCAT CGCCAGCGGC GATGTGCCGC TACCGCTCAG GAATCGCCGC
TTGCTGGCGC TCGACCTTGC CGGCATGGTT GCCGGGTCGA AGTTTCGCGG CGAGTTCGAG
GAGCGCCTGA AGGCGGTGAT GGACGAGGTG CGCAGCAGTG ATGGGCAGAT CATCCTGTTT
ATCGACGAAC TGCACACCGT CGTCGGCGCC GGCGCTGCCG TCGGTTCGAT CGATGCGTCG
AATATGCTCA AGCCGGCCCT TTCACGCGGC GAAATGCAGG TCATCGGCGC TACGACCATC
GACGAGTATC GCAAGCATGT CGAGAAGGAT GCAGCGCTCG AACGACGTTT CAGCCCAGTA
TTCGTTGAAG AGCCGGACGT CGAAACGACG GTCGAGATGT TGCGCGGTCT GCGCAAACGC
TACGAGGAAC ACCATCAGTT GACGATCAGC GATGAGGCGT TGAAGGCGGC GGCGCGCCTA
TCGAGCCGGT ATATCACGGA TCGCTTCTTG CCCGACAAGG CGATTGACCT GATCGATGAG
GCGTCCGCCA AATTGCGCAT CGACATCTAT TCAATGCCAA AGGCATTGCG CGATCAGGAA
GCCGAACTGA ACCGGTTGCG CCGCGAGGAG GAAGAAGCTG GCGCACGGCG CGATTACGAG
CGCGCCGCAA CGTTGCGCGC CCGCTATCTG CAACTCGAAA CCGAATTCGA GCGCGCGCGC
AGCGAGTGGC TCAAGAGTTC CGACCTCGAT GAGGTCGTCG ATGAGGAGGA CGTTGCCGCC
ATCGTCTCGA ACTGGACGGG CATTCCGGTC AGTCGCATGC TCGAAACCGA GCGTGAGAAA
CTCGTCGATA TGGAGGCGCG CCTGCACGAA CGGGTGATCG GACAGCACGA AGCGATTGTC
GCGCTCTCCG ATGCAATCCG CCGCGCGCGC AGCGGCTTGA AGGACCCGCG CCGTCCAATC
GGCAGTTTCA TCTTTGTCGG TCCAACTGGC GTCGGCAAGA CGGAACTTGC CAAGGCGCTT
GCTGAGTTCC TCTTCGACAG CGAAGATGCG ATGACCCGCA TCGATATGTC GGAGTTCCAG
GAGCGGCACA CGGTGTCGCG GTTGATCGGC GCGCCGCCCG GTTACGTGGG GTACGAAGAG
GCGGGGCAGT TAACCGAAAG CATCCGACGT CGTCCGTATC AGGTGGTACT GTTCGATGAG
ATCGAGAAGG CGCATCCAGA TGTGTTCAAC ACGCTGTTGC AACTGCTCGA CGATGGACGC
CTGACCGATG CGCAGGGGCA TACGGTCGAT TTCCGTAATA CGGTGATCAT TATGACTTCG
AACGTCGGCA CTGAGCATGT GCGGCAGCAG AACCTTGGTC TGGTGCGCAC GCACGACAAA
AGCGCTGAAG AAGCCGCGCG TGAGCGGGTG TTGGAGGCGC TGCGCCAGGC GTTCCGCCCC
GAGTTCCTCA ACCGCATCGA CGAGATTATT GTCTTCCACG CGCTGACCGA GCAGGAGTTG
CAGCAGATTG TCGATCTGCT GGCGCGCGAG GTCGATGAAC GATTGCGTGA GCAGGGGCTG
ACGCTCGAAC TGACGCCAGC AGCGAAGAAA GTGCTGGTGC GCGAGGGGTA CAATCCGGCG
TATGGCGCGC GCCCACTCCG TCGCACGGTG CAACGCATGG TCGAGACGCC GCTATCGCGC
AGCCTGCTGC GCGGAACGTT CAAAGCGGGT GATACGATCA TTGTCGATGT GGACCCGCAA
ACCGGTGAGT TGACGTTCAC TCGCCGCGAG ACGCTCAACC TGGAATTGAA GAAGCCGGTC
GAGCCGGTGA GCGGGTAA
 
Protein sequence
MRLERFTEKA QEAFQDAQEI MHDQHHTQLD VEHIFLAMLR QRDGLTARAI ARLGVDADMV 
ARRVEHELEK SPKVYGQYGY GNQVYITPRT QRLVKRAEEE ANRLNDQYVG IEHLLIAISG
EREGASSRIL NSFGIDQERI YQALMDIRGH QRADNPGAEA RYEALSKYSI DLTDMAAQGK
LDPVIGREAE ITRVIRILCR RTKNNPVLVG ETGVGKTAIA EGLAQRIASG DVPLPLRNRR
LLALDLAGMV AGSKFRGEFE ERLKAVMDEV RSSDGQIILF IDELHTVVGA GAAVGSIDAS
NMLKPALSRG EMQVIGATTI DEYRKHVEKD AALERRFSPV FVEEPDVETT VEMLRGLRKR
YEEHHQLTIS DEALKAAARL SSRYITDRFL PDKAIDLIDE ASAKLRIDIY SMPKALRDQE
AELNRLRREE EEAGARRDYE RAATLRARYL QLETEFERAR SEWLKSSDLD EVVDEEDVAA
IVSNWTGIPV SRMLETEREK LVDMEARLHE RVIGQHEAIV ALSDAIRRAR SGLKDPRRPI
GSFIFVGPTG VGKTELAKAL AEFLFDSEDA MTRIDMSEFQ ERHTVSRLIG APPGYVGYEE
AGQLTESIRR RPYQVVLFDE IEKAHPDVFN TLLQLLDDGR LTDAQGHTVD FRNTVIIMTS
NVGTEHVRQQ NLGLVRTHDK SAEEAARERV LEALRQAFRP EFLNRIDEII VFHALTEQEL
QQIVDLLARE VDERLREQGL TLELTPAAKK VLVREGYNPA YGARPLRRTV QRMVETPLSR
SLLRGTFKAG DTIIVDVDPQ TGELTFTRRE TLNLELKKPV EPVSG