Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1200 |
Symbol | |
ID | 5538666 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 1550416 |
End bp | 1552893 |
Gene Length | 2478 bp |
Protein Length | 825 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640893332 |
Product | ATPase |
Protein accession | YP_001431315 |
Protein GI | 156741186 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
TIGRFAM ID | [TIGR03346] ATP-dependent chaperone ClpB |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0973112 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACTCG AACGGTTTAC CGAGAAAGCG CAGGAAGCGT TTCAGGACGC GCAGGAAATC ATGCACGACC AGCATCACAC GCAGCTGGAC GTAGAGCATA TTTTCCTGGC GATGCTGCGG CAGCGCGACG GGCTGACGGC GCGCGCGATT GCGCGACTCG GTGTCGATGC CGACATGGTT GCGCGGCGCG TCGAGCACGA ACTCGAGAAG TCGCCAAAGG TGTATGGTCA GTACGGCTAC GGCAATCAGG TCTACATCAC GCCACGCACC CAGCGCCTGG TCAAGCGCGC TGAAGAAGAA GCCAACCGCC TGAATGATCA GTATGTCGGC ATTGAGCACC TATTGATCGC CATCAGCGGT GAGCGTGAAG GCGCGTCATC GCGCATTCTG AACAGTTTTG GCATCGATCA GGAACGTATC TATCAGGCGC TGATGGACAT CCGCGGTCAC CAGCGCGCCG ACAATCCCGG CGCCGAGGCG CGCTACGAGG CGCTCTCGAA ATATTCCATC GACCTGACCG ACATGGCGGC GCAAGGGAAA CTCGATCCGG TCATTGGGCG CGAGGCGGAG ATTACCCGCG TCATCCGCAT TCTTTGCCGC CGCACAAAGA ATAACCCCGT GCTCGTCGGC GAAACCGGCG TTGGCAAAAC CGCCATTGCC GAAGGGTTGG CGCAACGCAT CGCCAGCGGC GATGTGCCGC TACCGCTCAG GAATCGCCGC TTGCTGGCGC TCGACCTTGC CGGCATGGTT GCCGGGTCGA AGTTTCGCGG CGAGTTCGAG GAGCGCCTGA AGGCGGTGAT GGACGAGGTG CGCAGCAGTG ATGGGCAGAT CATCCTGTTT ATCGACGAAC TGCACACCGT CGTCGGCGCC GGCGCTGCCG TCGGTTCGAT CGATGCGTCG AATATGCTCA AGCCGGCCCT TTCACGCGGC GAAATGCAGG TCATCGGCGC TACGACCATC GACGAGTATC GCAAGCATGT CGAGAAGGAT GCAGCGCTCG AACGACGTTT CAGCCCAGTA TTCGTTGAAG AGCCGGACGT CGAAACGACG GTCGAGATGT TGCGCGGTCT GCGCAAACGC TACGAGGAAC ACCATCAGTT GACGATCAGC GATGAGGCGT TGAAGGCGGC GGCGCGCCTA TCGAGCCGGT ATATCACGGA TCGCTTCTTG CCCGACAAGG CGATTGACCT GATCGATGAG GCGTCCGCCA AATTGCGCAT CGACATCTAT TCAATGCCAA AGGCATTGCG CGATCAGGAA GCCGAACTGA ACCGGTTGCG CCGCGAGGAG GAAGAAGCTG GCGCACGGCG CGATTACGAG CGCGCCGCAA CGTTGCGCGC CCGCTATCTG CAACTCGAAA CCGAATTCGA GCGCGCGCGC AGCGAGTGGC TCAAGAGTTC CGACCTCGAT GAGGTCGTCG ATGAGGAGGA CGTTGCCGCC ATCGTCTCGA ACTGGACGGG CATTCCGGTC AGTCGCATGC TCGAAACCGA GCGTGAGAAA CTCGTCGATA TGGAGGCGCG CCTGCACGAA CGGGTGATCG GACAGCACGA AGCGATTGTC GCGCTCTCCG ATGCAATCCG CCGCGCGCGC AGCGGCTTGA AGGACCCGCG CCGTCCAATC GGCAGTTTCA TCTTTGTCGG TCCAACTGGC GTCGGCAAGA CGGAACTTGC CAAGGCGCTT GCTGAGTTCC TCTTCGACAG CGAAGATGCG ATGACCCGCA TCGATATGTC GGAGTTCCAG GAGCGGCACA CGGTGTCGCG GTTGATCGGC GCGCCGCCCG GTTACGTGGG GTACGAAGAG GCGGGGCAGT TAACCGAAAG CATCCGACGT CGTCCGTATC AGGTGGTACT GTTCGATGAG ATCGAGAAGG CGCATCCAGA TGTGTTCAAC ACGCTGTTGC AACTGCTCGA CGATGGACGC CTGACCGATG CGCAGGGGCA TACGGTCGAT TTCCGTAATA CGGTGATCAT TATGACTTCG AACGTCGGCA CTGAGCATGT GCGGCAGCAG AACCTTGGTC TGGTGCGCAC GCACGACAAA AGCGCTGAAG AAGCCGCGCG TGAGCGGGTG TTGGAGGCGC TGCGCCAGGC GTTCCGCCCC GAGTTCCTCA ACCGCATCGA CGAGATTATT GTCTTCCACG CGCTGACCGA GCAGGAGTTG CAGCAGATTG TCGATCTGCT GGCGCGCGAG GTCGATGAAC GATTGCGTGA GCAGGGGCTG ACGCTCGAAC TGACGCCAGC AGCGAAGAAA GTGCTGGTGC GCGAGGGGTA CAATCCGGCG TATGGCGCGC GCCCACTCCG TCGCACGGTG CAACGCATGG TCGAGACGCC GCTATCGCGC AGCCTGCTGC GCGGAACGTT CAAAGCGGGT GATACGATCA TTGTCGATGT GGACCCGCAA ACCGGTGAGT TGACGTTCAC TCGCCGCGAG ACGCTCAACC TGGAATTGAA GAAGCCGGTC GAGCCGGTGA GCGGGTAA
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Protein sequence | MRLERFTEKA QEAFQDAQEI MHDQHHTQLD VEHIFLAMLR QRDGLTARAI ARLGVDADMV ARRVEHELEK SPKVYGQYGY GNQVYITPRT QRLVKRAEEE ANRLNDQYVG IEHLLIAISG EREGASSRIL NSFGIDQERI YQALMDIRGH QRADNPGAEA RYEALSKYSI DLTDMAAQGK LDPVIGREAE ITRVIRILCR RTKNNPVLVG ETGVGKTAIA EGLAQRIASG DVPLPLRNRR LLALDLAGMV AGSKFRGEFE ERLKAVMDEV RSSDGQIILF IDELHTVVGA GAAVGSIDAS NMLKPALSRG EMQVIGATTI DEYRKHVEKD AALERRFSPV FVEEPDVETT VEMLRGLRKR YEEHHQLTIS DEALKAAARL SSRYITDRFL PDKAIDLIDE ASAKLRIDIY SMPKALRDQE AELNRLRREE EEAGARRDYE RAATLRARYL QLETEFERAR SEWLKSSDLD EVVDEEDVAA IVSNWTGIPV SRMLETEREK LVDMEARLHE RVIGQHEAIV ALSDAIRRAR SGLKDPRRPI GSFIFVGPTG VGKTELAKAL AEFLFDSEDA MTRIDMSEFQ ERHTVSRLIG APPGYVGYEE AGQLTESIRR RPYQVVLFDE IEKAHPDVFN TLLQLLDDGR LTDAQGHTVD FRNTVIIMTS NVGTEHVRQQ NLGLVRTHDK SAEEAARERV LEALRQAFRP EFLNRIDEII VFHALTEQEL QQIVDLLARE VDERLREQGL TLELTPAAKK VLVREGYNPA YGARPLRRTV QRMVETPLSR SLLRGTFKAG DTIIVDVDPQ TGELTFTRRE TLNLELKKPV EPVSG
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