| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1195 |
|---|
| Symbol | |
|---|
| ID | 5538661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 1543595 |
|---|
| End bp | 1544404 |
|---|
| Gene Length | 810 bp |
|---|
| Protein Length | 269 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640893327 |
|---|
| Product | anti-sigma-factor antagonist |
|---|
| Protein accession | YP_001431310 |
|---|
| Protein GI | 156741181 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
[COG2172] Anti-sigma regulatory factor (Ser/Thr protein kinase) |
|---|
| TIGRFAM ID | [TIGR00377] anti-anti-sigma factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.123525 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACG CCCCACCGCA GCGGCGCATG ATGCGCACAG TCTGCGCTCA CCGCCTGATG
ACTGGCATTC CGATGGAATC TTTGACGGTC CCGGCTACCC TTGAATCGCT GGCGCAGATC
AGCGCCTTTG TCGGAGAAGC GACGCAACGC GCTGGTCTCG ACGAGCACGC CGCATGGCAG
GTCGAACTGG CGGTGGATGA AGCGGCAACG AATATCATTC AGCATGGGTA CGATCCCGGC
AAGCCGGGCA TCATTGAACT GACATGGCGG ATCGAGAACA ACCGCCTGAT CATCACGCTG
CGCGACTATG GACGGCGCTT TAATCCCGAC GATGTGCCGC CGCCGGATCT TTCATCGCCG
CTGGAGGAGC GGCAGCCCGG CGGACTGGGA CTCTATCTGA TGAACCGCTT GATGGATCAG
GTGCGCTTCG ATTTCGACGA CGCCAACGGC AATCTTCTGA CGATGGTGAA AGAGATTCTG
CCACGTGTGC AGGCGCACGA GTTCCGATTG AGCGGCAGGC TTGATGCGGT TGGAACAGCG
ACGGCGCTTG CGCCGGTGCA TCGGGCGATT GCCGATGGGG CGGAGTATGT CTTGCTCGAT
TTCGATGATG TGACGTTTCT TAGCAGCACG GCACTGCGTT CGCTGTTACT CGCGCGCAAA
GAGTTGTTGG AGCGCAACGG TGAACTTCGC CTCTGTAATC TGCGCCCACA GGTGCGTGAG
GTGTTCGAGT TGACCGGCTT CACCCGGATT TTTGCCATTC ACTCCTCGCG CAATGAGGCG
CTGGCGGCAT TCGGTCAGGA ACACGCGTGA
|
|---|
| Protein sequence | MSNAPPQRRM MRTVCAHRLM TGIPMESLTV PATLESLAQI SAFVGEATQR AGLDEHAAWQ
VELAVDEAAT NIIQHGYDPG KPGIIELTWR IENNRLIITL RDYGRRFNPD DVPPPDLSSP
LEERQPGGLG LYLMNRLMDQ VRFDFDDANG NLLTMVKEIL PRVQAHEFRL SGRLDAVGTA
TALAPVHRAI ADGAEYVLLD FDDVTFLSST ALRSLLLARK ELLERNGELR LCNLRPQVRE
VFELTGFTRI FAIHSSRNEA LAAFGQEHA
|
|---|
| |