Gene Rcas_1160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1160 
Symbol 
ID5538626 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1503436 
End bp1504506 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content58% 
IMG OID640893292 
Productmyo-inositol-1-phosphate synthase 
Protein accessionYP_001431275 
Protein GI156741146 
COG category[I] Lipid transport and metabolism 
COG ID[COG1260] Myo-inositol-1-phosphate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGAAGA AAGTTCGTGT TGCAATCATC GGTGTCGGCA ACTGCGCCTC GTCACTGGTG 
CAGGGAGTCG AGTACTATCG CAACGCCCGA ACCGATGAGT TCGTTCCAGG TTTGATGCAC
GTCAACCTCG GCGGCTATCA CATTGGCGAT ATCGAGTTTT CAGCAGCATT CGACATCGCC
GATACGAAAG TCGGCAAAGA CCTCTCGGAG GCAATCTTCG CGCCGCCGAA CAATACATAC
CGCTTCGCGC ATGTGCCACA CCTCGGCGTG CCGGTACATC GCGGGATGAC CCACGACGGT
CTGGGAAAAT TTCTGAGCCA GAAGGTGCAT AAAGCGCCGG GGGCGACTGA TGACATCGTC
AATATTCTGC GCTCCACCCG CACCGATGTC GTCGTGTCGT ATCTGCCGGT TGGCAGCGAA
ATGGCGACGA AGTGGTATGT CGAGCAGATC CTGGATGCCG GGTGCGGCTT CGTCAACTGT
GTGCCGGTGT TCATCGCCAG CCAGGCGTAC TGGCGCAAAC GCTTCGAGGA GCGCGGATTG
CCGATCATCG GTGATGACAT TAAGAGCCAG GTTGGCGCCA CCATCACGCA TCGTGTGTTG
ACGGCGCTAT TCCGCGATCG CGGCGTGCGC CTCGACCGCA CCTACCAGTT GAACTTCGGC
GGCAATACCG ATTTTTACAA CATGCTCGAA CGGGAGCGCC TGGAGAGCAA GAAGATCAGC
AAAACCAACG CCGTCACCAG CCAACTCGAT TACGATTTGC CCGACGACGC GGTGCATGTT
GGTCCGAGTG ATTATGTGCC CTGGCTGGAA GATCGCAAAT GGTGTTACAT TCGCATGGAG
GGCACCACGT TCGGGAATGT GCCGATCAAT CTCGAATTGA AACTGGAAGT CTGGGATTCG
CCCAATTCGG CTGGTGTTGT CATCGATGCC GTGCGCTGCG TCAAACTGGC GCTCGACCGC
AACATTGCCG GCGCGCTGGT CGGACCGAGC GCCTATTTTA TGAAGACGCC GCCGCAACAG
ATGACCGACA ATGAGGCGCG TCGGTTGACG GAAGAGTTCA TCGCCGGGTG A
 
Protein sequence
MSKKVRVAII GVGNCASSLV QGVEYYRNAR TDEFVPGLMH VNLGGYHIGD IEFSAAFDIA 
DTKVGKDLSE AIFAPPNNTY RFAHVPHLGV PVHRGMTHDG LGKFLSQKVH KAPGATDDIV
NILRSTRTDV VVSYLPVGSE MATKWYVEQI LDAGCGFVNC VPVFIASQAY WRKRFEERGL
PIIGDDIKSQ VGATITHRVL TALFRDRGVR LDRTYQLNFG GNTDFYNMLE RERLESKKIS
KTNAVTSQLD YDLPDDAVHV GPSDYVPWLE DRKWCYIRME GTTFGNVPIN LELKLEVWDS
PNSAGVVIDA VRCVKLALDR NIAGALVGPS AYFMKTPPQQ MTDNEARRLT EEFIAG