| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1100 |
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| Symbol | |
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| ID | 5538566 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 1423980 |
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| End bp | 1425437 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640893234 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
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| Protein accession | YP_001431217 |
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| Protein GI | 156741088 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.117199 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTGCGAC TGGACGAAGT GCTGCCCGGC GTGCAGGAGG AGGTCAATCG GCGCATCCAT
GCGCTGCCTC CCGCGTTGAT GCAGGTCGCC TTTAGCGAAG CAGTAATCGA TTCGCGTCTG
GCGACGTCGG AGTGCCTGTT TGTCGCATTG CGCGGCGAAC GGGTCGATGG CCACGAATTT
CTGGCGGACG CGGCGGCGCG TGGCGCGCGC GGCGCTTTAG TGCGCCGCAG CAAAGTGTCG
AGCCTGACGC TCGAACGCCC TTATGTGGTG ATCGATCCGG TTACCGGTGA GGGTCTCGAA
CGGGCGACGC CCGACACGAT GCTGTTGATC GCTGTCGATG ATCCGCAGGC GGCGCTGAAC
CGGCTGGCCG CCTATCACCG GGGGATGTAC AACCCCGTCG TGATCGGCAT CACCGGGAGC
GTGGGCAAAA CCTCGACGAA AGAGGTGACC GCCGGCGTTC TTCAGCGCAG CTTTCGCACC
TTAAAAAGCC CAAGAAGTTA CAACAGCGAG GCGACATTGC CCATCGTGCT GCTTAAACTT
ACCGCCGACC ATCAGGTGGC AGTGCTCGAG ATGGGTATGT ACGGGCCGGG CGAGATCGCG
CATCTTGCGG CTCTCGCCCG ACCACGCCTC GGCATCGTCA CGAATGTGGG ACCATCGCAC
CTTGAGCGTA TGGGAAGCAT CGAAGCCATT CAGCGCGCCA AAAGCGAACT GCCGCAGGCG
TTGCCGGAGG ATGGGTTCGC CATCCTCAAC ATCGACGATC CGCGTGTGCG TGCGATGGCG
GAGGTGACGC GCGCCCGACC GTTTTTCTAC GGTCTCGACC CGGCAGCCGA CCTGTGGGCG
GACGCGATCG AGAGCCGCGG TTTGCAGGGC GTCAGTTTTC GGGTGCATTA TCAGGGGGAT
GGTTTGCATC TGACGCTGCC GTTGTTGGGG CGGCATAGCG TGCATACAGC GCTCGCGGCT
GCTTCCGCCG GGTTGTTGCT TGGCATGGAA TGGGAAGCGA TCATCGCCGG GTTGCGTAGC
GAAGGCGCCC AACTCAGGCT ACTGGCAGTT CCGGGCATCA ACCAGACGAC GCTGATCGAC
GACACGTACA ACGCCTCGCC TGCCTCGATG CAGGCAGCGC TCAACCTTCT GGCAGAACTC
GATGGTCGGC GGATCGCCAT CCTGGGCGAT ATGCTGGAGT TGGGGAGCAT CGAGGAAGAG
GCGCACCGCA TGGTCGGGGC GCGGGCGGCG GAAGTGGCGC AGATTCTGAT CGCTGTCGGG
CAGCGCGCGC GCTGGATTGC CAATGAGGCG CAGCAGGCGG GATTGCCCGC TGATCAGGTG
TACGCGGTTG ACGACAATGA TGCAGCGGCG CACCTGGCGC GCAACCTGCT TGCACCTGGC
GACTTTGTGT TGATCAAAGG GTCGCGCGGC ATGTTTATGG AAACGATTGT GTCACAGTTG
CAGGCACATC GTCCATAA
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| Protein sequence | MLRLDEVLPG VQEEVNRRIH ALPPALMQVA FSEAVIDSRL ATSECLFVAL RGERVDGHEF
LADAAARGAR GALVRRSKVS SLTLERPYVV IDPVTGEGLE RATPDTMLLI AVDDPQAALN
RLAAYHRGMY NPVVIGITGS VGKTSTKEVT AGVLQRSFRT LKSPRSYNSE ATLPIVLLKL
TADHQVAVLE MGMYGPGEIA HLAALARPRL GIVTNVGPSH LERMGSIEAI QRAKSELPQA
LPEDGFAILN IDDPRVRAMA EVTRARPFFY GLDPAADLWA DAIESRGLQG VSFRVHYQGD
GLHLTLPLLG RHSVHTALAA ASAGLLLGME WEAIIAGLRS EGAQLRLLAV PGINQTTLID
DTYNASPASM QAALNLLAEL DGRRIAILGD MLELGSIEEE AHRMVGARAA EVAQILIAVG
QRARWIANEA QQAGLPADQV YAVDDNDAAA HLARNLLAPG DFVLIKGSRG MFMETIVSQL
QAHRP
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