Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1078 |
Symbol | |
ID | 5538544 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 1397016 |
End bp | 1398056 |
Gene Length | 1041 bp |
Protein Length | 346 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640893213 |
Product | histone deacetylase superfamily protein |
Protein accession | YP_001431196 |
Protein GI | 156741067 |
COG category | [B] Chromatin structure and dynamics [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGTTG TTGCGTCCGA CACCCATCTT CAGCACAATC CGCCCCACGA GTTCCTCGAT GGCGCGCTGA TTCCAATCTA CGAGACGCCG GAACGTGTGG CGATTATTCG CGCCGCGCTC GAACGTGCTG CCATTGGTCC TGTCGTCGAG CCGCGCGCGT TCGGAATCGA ACCGGTGCGC ACCGTTCACG ATGACGGATA TCTGACCTAT CTTGAGACGA TCTACGACCG CTGGGTTGTT GCAGGCGGTG CGCCGGAAGC GGTCATTCCC GGAACGCTGG CAGTGCGCTG GATGTCGCGA CCGCACGATC ACCCGCTGGC TGCACCCGGG TATTATACGT TCGATACGTG CGCTCCAATT GTGGCAGGCA CTTATGCCGC CGCGCGTGCT GCCGCCGATG TAGCGCTGAC CGGCGCCGAG TTGCTCCTGA TCGGTTCACG TTGTGCGTAT GCGCTCTGTC GCCCGCCGGG ACATCATGCC GGGCGTGATC TGTGCGGCGG GTACTGTTTC CTCAACAATG CTGCGATTGC AGCGGCGTAT CTGGTGCGCA ACGCACCAGA CGCGACGTGC GCCATTCTCG ACATCGATTT CCACCACGGC AATGGCACAC AACAGATCTT TTACGAACGC AGTGATGTGC TGTTTGTCTC GATCCACGCC GCACCGTCGT ACCAGTATCC CTTCTTTCTG GGCTACGCCG ATGAGCGCGG CGCCGGCGCC GGTGAGGGGT ATAATCTGAA CCTGCCGCTG GATGCGGGCG TAGGGGACCG TGAGTATCTG GTGGCGCTCG ACCGGGCGCT CGATGCGATT GCAGCGTTTG CGCCGCGTTT TCTGGTGCTT TCGGCAGGGT TCGATACGTT CGAAGGCGAT CCGGTCGCCA ATCATGGCGA CAGTTTTGCG CTTAGCATGG CAGTCTACCC TGAGATCGGG CGGCGCATTG CTGCGCTCAA TCTGCCGACA CTGGTCGTTC AGGAGGGAGG ATACGCCATC GACGCACTCG GCGATAATGT CGTCGGGCTG TTACAGGGTC TCGAGGAGTA A
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Protein sequence | MIVVASDTHL QHNPPHEFLD GALIPIYETP ERVAIIRAAL ERAAIGPVVE PRAFGIEPVR TVHDDGYLTY LETIYDRWVV AGGAPEAVIP GTLAVRWMSR PHDHPLAAPG YYTFDTCAPI VAGTYAAARA AADVALTGAE LLLIGSRCAY ALCRPPGHHA GRDLCGGYCF LNNAAIAAAY LVRNAPDATC AILDIDFHHG NGTQQIFYER SDVLFVSIHA APSYQYPFFL GYADERGAGA GEGYNLNLPL DAGVGDREYL VALDRALDAI AAFAPRFLVL SAGFDTFEGD PVANHGDSFA LSMAVYPEIG RRIAALNLPT LVVQEGGYAI DALGDNVVGL LQGLEE
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