Gene Rcas_1037 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_1037 
Symbol 
ID5538503 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1354244 
End bp1355698 
Gene Length1455 bp 
Protein Length484 aa 
Translation table11 
GC content58% 
IMG OID640893176 
Productputative PAS/PAC sensor protein 
Protein accessionYP_001431159 
Protein GI156741030 
COG category[T] Signal transduction mechanisms 
COG ID[COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACCTGC TGCTTATCAT TCTGACAATA ATCATTTTGA CGGCAACCGG CATGTACGTA 
TTGGTGCAAG ACTGGCGCGC GCTTGCCAAT CGGCTGTTCG TCTTCTTCGT TTTCGTCGCT
ATTGCTTATA TGTGCGTCGC CGTGATGCGT CTGGCAAGTC AGAGCTGGGA AGAAATATGG
TTTTTCCATG GTTTGACTGC GCCGTTGCTT GCTATTGATG CATGGTTGCT GATCTGGCTT
ATTCTGGCGA TTTTCATGCC GCATCTTTAC GTCCGGCGCG GGATACGATG GCTTCTGGCG
ATGCCATATC TGATCATGAC GCTGTTTCTG TTGCTGGACT GGTATGCCGG TTTTGGGTTG
GTCAGAATCT CGGATGGTTT GGAAGAAGGC GGTCGTCTGT TCTTCCCGGT GGGACCGATA
TTTGCTCCAA TCGTGGCGCT CTATACGTTA GGAGGCATGC TTGCGCCGAT CATTATGCTG
TTGTCCGTCA TTCGTCAGAA TCGCCAGGCG CTGCACCCGG CTCTGTGGCT GTCGGGCGGA
ATTATGTTAT CTTTCGTCGC AGGCGCGTTT TTCGGTGAAC TTTCGTTTAC GGGATTAAGT
TACGTCAGTA TGCTTCCACT TTATCTGGCG TTCGGTTGGG TGACATTGCG CTACCAGGTG
TTTCGCCCCT CGAGTGTGGC GTTGCGCACT GCTGTCGAAC ATCTGCCGGA TGGGATCGTG
GTGCTCGACA CGCAACGACG GGTGCGCTTC GCTAATCGCG CGGCGCAGCG CCTGGTATCA
CTCACCGATG CCGGCGATAT GCCATTTGAG GACGCGCTGG CGCGTGCCGG CTTTAATGAA
CAAACGTCTC CTGATGATCG GATCGTCGAT CTGCGGCGCT TCCACCGTGA TGGCGAGGTC
GCAACGACGC TGGTGGTATC GGAAGCCGCC ATCGAAGGCG AGCGCGGATC CGCAAGTGTC
CTGATTCTGC GCGATATGAC GACGGTGGAA CAACAGAAGG CGGCGCTGGC GGCATCGCGC
GCAGCGCTCG AAGAACGTAC CGCAGCGCTG GAATGTTCGC TGAAGGAGAT TCAGGAGCGA
GACGCGCTGA TTACCCGCCT GACACTGCCG TTGATTCCGT TGAGTGATGG CGTGCTGGCA
ATGCCGCTGA TCGGCGCGTT CGACGGCGCG CGTTGCGAGG CGCTCATCGC ACTGCTGCTG
AAGCGGATTG AGGAGCGCAG CGCGCGCGTG GTCTTGCTCG ATCTGACCGG TATCACCGGC
TTTGATGAGT CGCTGGCGGC GGCGCTGCGT CAGGCGGCGG ATAGCGCTCG CCTGATGGGG
GCGCACATTG CGCTGTGCGG CATTCGTCCC GACATTGCCG AAAGCATCGT CCACGAACGG
ATGCACCTGA ACAGCGTGCG CCTCTTTGCG ACGATGCAGG AGGGAGTAGC GGCATTGCTG
GGGCACAACC GATGA
 
Protein sequence
MNLLLIILTI IILTATGMYV LVQDWRALAN RLFVFFVFVA IAYMCVAVMR LASQSWEEIW 
FFHGLTAPLL AIDAWLLIWL ILAIFMPHLY VRRGIRWLLA MPYLIMTLFL LLDWYAGFGL
VRISDGLEEG GRLFFPVGPI FAPIVALYTL GGMLAPIIML LSVIRQNRQA LHPALWLSGG
IMLSFVAGAF FGELSFTGLS YVSMLPLYLA FGWVTLRYQV FRPSSVALRT AVEHLPDGIV
VLDTQRRVRF ANRAAQRLVS LTDAGDMPFE DALARAGFNE QTSPDDRIVD LRRFHRDGEV
ATTLVVSEAA IEGERGSASV LILRDMTTVE QQKAALAASR AALEERTAAL ECSLKEIQER
DALITRLTLP LIPLSDGVLA MPLIGAFDGA RCEALIALLL KRIEERSARV VLLDLTGITG
FDESLAAALR QAADSARLMG AHIALCGIRP DIAESIVHER MHLNSVRLFA TMQEGVAALL
GHNR