| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0988 |
|---|
| Symbol | |
|---|
| ID | 5538454 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 1291498 |
|---|
| End bp | 1292055 |
|---|
| Gene Length | 558 bp |
|---|
| Protein Length | 185 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640893132 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001431115 |
|---|
| Protein GI | 156740986 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCTT CTCCCGCAGA TTCCGACTTC CCGCTCTCCG ACAGCGACCT GATCAAACGG
GCGCAAGACG GCGACCATGC GGCGTTTGCC CAGATTTATG ATCGCTATGC TCAACCGCTC
TACCGGTACA TCTATTTTCG GATCGGCGAT CCCGATCTTG CCGAGGATCT TCGGGCAGAA
GTCTTTCTGC GCGCATTCGA AGGTCTCGAC CGCTACGAGG ATCGTGGCTG GCCCCTCTCC
GCCTGGCTCT ACCGCATTGC GCGCGATCGC ACCGTCGATG TGATCCGCCG CCGTCGTCTG
CGGCAAACCG TTCCATTGGA GAGTTGGGGC GGCGCCTGTG AGGGACCCGA TCACGAAGTT
GTGATGCGCC TCGACCACGA AGAACTGCGG CGTCACCTGT GCGATCTCAC CGACGATCAG
CGGCAGGTGC TCTACCTGCG CTTCATGGTC GATCTCCCGA TCCAGGAAGT GGCGCAGCGT
CTCGGTCGTT CCGAGGGTGC GGTGAAGGCG TTGCAACATC GCGGGTTGCA ATCGCTCGCG
CGGCGCCTCG CGCTGTAA
|
|---|
| Protein sequence | MDASPADSDF PLSDSDLIKR AQDGDHAAFA QIYDRYAQPL YRYIYFRIGD PDLAEDLRAE
VFLRAFEGLD RYEDRGWPLS AWLYRIARDR TVDVIRRRRL RQTVPLESWG GACEGPDHEV
VMRLDHEELR RHLCDLTDDQ RQVLYLRFMV DLPIQEVAQR LGRSEGAVKA LQHRGLQSLA
RRLAL
|
|---|
| |