| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0867 |
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| Symbol | |
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| ID | 5538333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 1135682 |
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| End bp | 1136674 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640893018 |
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| Product | periplasmic binding protein/LacI transcriptional regulator |
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| Protein accession | YP_001431001 |
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| Protein GI | 156740872 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000788488 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTACCC TAACCTCACG ACACATGCCA CTTTTTCTGC TCATGCTCAT TGTTGCGCTT
ACCGCCTGCA CTGCGCCGAC ATCCGCCCCG ACCGGCAACA ACGCGCCGCG TCAGTGGCGT
ATTGGAATGT CTCAGGCAAA CAACGCCGAG CCGTGGCGCC AGGCGATGAA TGACCAGATT
GCCGCCGCCG CTGCCCGTTA TCCGCACATC CGCATTGAGT TCACCGATGC ACGCCAGAAC
AATGCGCAAC AGGTCGCCGA TGTCGAGACC TTTCTCCAGC AAGGGATCGA CCTGCTGATC
ATTTCACCCA ACGAAGCCAC CCCGCTTACG AATATCGTCG CACAAGCGTT TCAGCGCGGC
ATTCCGGTGA TCGTGCTGGA TCGCAAGGTG AGGGGCGACC AGTACACTAT GTGGATCGGG
GCCGACAACC GCCTGATCGG TCGGAAAGCG GGTGAGTATA CGGCGCGCTG GTGCCGTGAA
CAGCAACGAT CGCCGTGCAA CGTGATCGAA CTGCGCGGTC TGGAAGGCTC CACACCGGCG
CAGGAACGCG GCGATGGCTT CCGCGAAGGG ATTGCTGGCA ACCCGGATGT GCGCATCATT
GCCAGCCAGA ATGCCGATTG GCTGGCCGAG CGCGCCGCAC CGCTATCGCG CGCGATGTTG
GAAGCCAACC CTGTGGTTGA TGTCGTCTAT GCCCACAACG ATCCTATGGC TATCGCGTCC
TTCACCATGG CGCGGGATCT GGGGCGTGAC CCGGACTCGA TCCTGTTCAT CGGCATCGAC
GCTCTTCCGA CGCCCGATGG CGGCATCCAG GCGGTGCGGC AGGGACAACT CGATGTCACC
TATGTGTACC CGACCGGTGG GGCGGAAGCT GTCGAGTGGG CGATTCGGAT ACTGGAGCGA
GGCGAAACGC CACCGCGCGA GGTTATTCTT GACACGGAAG AAGTGACCAG GGCGAATGCC
GACGCTCTAT GGCAAAAATA TGGAGGGCGG TAA
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| Protein sequence | MPTLTSRHMP LFLLMLIVAL TACTAPTSAP TGNNAPRQWR IGMSQANNAE PWRQAMNDQI
AAAAARYPHI RIEFTDARQN NAQQVADVET FLQQGIDLLI ISPNEATPLT NIVAQAFQRG
IPVIVLDRKV RGDQYTMWIG ADNRLIGRKA GEYTARWCRE QQRSPCNVIE LRGLEGSTPA
QERGDGFREG IAGNPDVRII ASQNADWLAE RAAPLSRAML EANPVVDVVY AHNDPMAIAS
FTMARDLGRD PDSILFIGID ALPTPDGGIQ AVRQGQLDVT YVYPTGGAEA VEWAIRILER
GETPPREVIL DTEEVTRANA DALWQKYGGR
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