| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0743 |
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| Symbol | |
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| ID | 5538209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 971721 |
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| End bp | 973763 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640892899 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001430882 |
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| Protein GI | 156740753 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.500154 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAGG CAGGTCACAG CGAGACACGG CCCCACGCCG ATGCGTTTCT TCACGCACGA
GCCGTGAATC ATTCTCCGCA TGCCCGTGTG AGCGCCGAGG AAGGCGATGG GTTTGATCAC
CTTTCAATCG AGCATACCCT CAAACGCGAA AGGCAGCTCA ATGCGCTGAC GCAGATCCTT
CACAGTGCGC ACGATATTCA CAGCGTCATG CCCAATGTGC TACGCATGGT CGCCGAACTG
GTCGAAGCCG ACGCAGTGGC GCTCCCACTG ATCAGGCGCG ATACCGAGAC GCTGGAATTT
TGTTATACGT TGGGAGTTCC CGAATCGTTG CTTGCCACAA AAGTTCCGCG CGGCGCCAAC
CTTTCCTGGC AGATCATCGA ACATCAGCTC CCTGTGCTGA TCAATGGATA TCATCATCAC
GAGCGCGCCC TCCAGTCGCT TGTGGCGCAC GACGTTCGCG CTGTCATCGG GACACCGGTC
GCAGTCGATG AGCAACCGGT CGGTGTCCTC GCTGTCTATC GCATTGGGCG CGACGATCCA
TTCACCGCTC ACGATCTCAA CATCCTGACC GTTGTTGGAC GGCAGATCGG TCTGACCATT
GATCGAATCC AACGGTATCA GACCGCCGTC CAGGAAGCGG AGCGGCGCAT TGCGCTGTTG
TATGCCAGTC AACAGATCGG GGCAACCCTC GACTTGCCGC ACCTGTATCG CACGATCCAT
CAGGCTATTA CCACGCTCAT ACCTTGTGAA TCATTTGCGC TGATGCTGAT CGATTCGGGA
AGCAACCGGT TGGACGTTGT GTACTGTGAT GCTGATGCGC ATGACCCAGC GGAGCATATC
GTAGACGAAG CCGTTGCGCA GGTCCTCGCC GGTGGACAGT CGCTGTGCGT GGCAGGCGGC
GGTCAGAATA CACGCTTGCT GATTGTCATG CGTCGCGGCG GACAAACGCT AGGGGTCATG
TCGGCGCGCA CACGCGCTTC GCACATTTGT TCCGCCACTG ATCTTGAAAT GCTCGATCAA
CTGGCGACCA CCGCTGCTAT TGCTATCGAG AATGCCCGCC TGTTCGAGGC GGCACGGCGC
GAAGCAGATA TGCGCACTCG TCTCTACGAA GCGAGTCAAC GACTCGGTGC GCTCCTCGAT
CTGAATCAGA TCTATGATGA GATCTATCGC GCCACGATGT CTCTGGTCAC CTGTGATGGG
TTTCTGGTTG CGCTCAAGAG CGGCGAACAG GCGCCTCCAG GTGTAATCTA CTGTGTCGGC
CGCGCATACA GCAAGGCATG CGCCAATCTT GCACATCGCG CCATTGAGAA GGAAGAGTCG
CTACGGTGTG ATAACACTGA GTGTGGAAGC AGCGTCCTCG TTGCTGTAAT GCGCCGTGGC
GGACGGGTCA TCGGCGCCAT CCTCGTTCGC GCGTCGCAAC CATATACCTA CACCGACGCC
GACCGCAGCG CCCTCGAACT CCTCGGTGCA ACCGCGGCGA TTGCCATCGA CAATGCGCGC
CTCTTCGCCG ATGCGCGCCG CCATGCAACG ATCGACGAAC TGACCGGTGT GTGGAACCGA
CGCTCTTTCT TCGAGAACGC CAGGCGCGAG TTTTTGCGCA GTCAGCGCAC CTTGCGTCCG
CTGGCGGTGC TGATGTTTGA TATCGATCAC TTCAAGTCGG TCAACGACAC CTACGGGCAC
GCGGTCGGCG ATCAGGCGCT GCGCGACCTG GCGGAACGCT GCCGCAATCA ATTGCGAGGC
ATCGATATTA TTGGGCGCTA CGGCGGCGAA GAATTCGCTG TGGCGCTCCC CGATACCGAT
ATTGACGCGG CGGAACATAT TGCGGAGCGT CTGCGCACTG CTGTCGAGAA TACCCCGTTT
GCGACTGCTC AGGGATCAAT TTCCTTGACG ATCAGCATTG GGGTGGCGGT ATGTCATCCA
GACGATCAGA CAACGCTCGA TGCCATCATT GATCGCGCCG ATCGGGCGCT GTACCTCGCC
AAGCGCAGTG GACGCAACAG TGTGCGGGTC TGGTCGTATT CTGCAAAAGA GTCTAAGGGT
TAG
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| Protein sequence | MTQAGHSETR PHADAFLHAR AVNHSPHARV SAEEGDGFDH LSIEHTLKRE RQLNALTQIL
HSAHDIHSVM PNVLRMVAEL VEADAVALPL IRRDTETLEF CYTLGVPESL LATKVPRGAN
LSWQIIEHQL PVLINGYHHH ERALQSLVAH DVRAVIGTPV AVDEQPVGVL AVYRIGRDDP
FTAHDLNILT VVGRQIGLTI DRIQRYQTAV QEAERRIALL YASQQIGATL DLPHLYRTIH
QAITTLIPCE SFALMLIDSG SNRLDVVYCD ADAHDPAEHI VDEAVAQVLA GGQSLCVAGG
GQNTRLLIVM RRGGQTLGVM SARTRASHIC SATDLEMLDQ LATTAAIAIE NARLFEAARR
EADMRTRLYE ASQRLGALLD LNQIYDEIYR ATMSLVTCDG FLVALKSGEQ APPGVIYCVG
RAYSKACANL AHRAIEKEES LRCDNTECGS SVLVAVMRRG GRVIGAILVR ASQPYTYTDA
DRSALELLGA TAAIAIDNAR LFADARRHAT IDELTGVWNR RSFFENARRE FLRSQRTLRP
LAVLMFDIDH FKSVNDTYGH AVGDQALRDL AERCRNQLRG IDIIGRYGGE EFAVALPDTD
IDAAEHIAER LRTAVENTPF ATAQGSISLT ISIGVAVCHP DDQTTLDAII DRADRALYLA
KRSGRNSVRV WSYSAKESKG
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