Gene Rcas_0740 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0740 
Symbol 
ID5538206 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp966821 
End bp969319 
Gene Length2499 bp 
Protein Length832 aa 
Translation table11 
GC content60% 
IMG OID640892896 
Productnucleotidyl transferase 
Protein accessionYP_001430879 
Protein GI156740750 
COG category[G] Carbohydrate transport and metabolism
[J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1109] Phosphomannomutase
[COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.2195 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGCTG TGGTCATGGC TGGCGGTGAG GGTTCACGTC TGCGCCCTCT CACGATCAAC 
CGCCCGAAAC CCATGGTGCC CATTGTTGAT CGCCATGTAA TGGCGCACAT TATCGAGTTG
CTCAAACGAC ACGGCATCAC CGACATCGTG GTGACGGTTC AGTACCTGGC AAATGTCATC
CAGGACCACT TCGGCGACGG ATCGGCATAT GGCGTCCATA TCGAATATTC ACTCGAAGAA
CAACCGCTGG GCACAGCCGG CAGCGTCAAG AATGCCGAAC GCTTCCTGCG CGAGCCGTTT
CTCGTCATCT CCGGCGACGC GCTCACCGAT TTCGATCTGA CGAAGATCAT CGAGTTTCAT
CAAAGCCACG GCGCGACCGC CACGATCACC CTGACCCGCG TTCCCAATCC GCTCGATTAC
GGCGTGGTGG TGGTGGATGA ACGCGGCTAT GTGCGTCAGT TCCTCGAAAA ACCGAGCTGG
GGCGAGGTCT TTTCCGATAC GGTCAATACC GGCATCTATG TCGTCACCCC TGAAATCTTC
CGCTATATCG AAAAAGGCGC GTTCACCGAC TGGTCGAAAG ACGTCTTTCC GCGCATGCTG
CGCAGTGGAA ACCTGCCGGT CGGCTATGTC GCCGAAGGGT ACTGGACCGA CATCGGCACG
ATTGAAGAAT ACATGCGCGC CAGTCGCGAC TATATGCAGG GGAAGGTCAA CCTGCCGCGT
GTCGGTGAAC GCATCTTCGA TGAGGTGTGG GTCGAAGGGG ATGTCGAAAT TGCGCCCGAT
GCGCAGTTCC ATGGTCCGGT CTTCCTGGGG CATGGCGTCA AAATCAAGAG CGGCGCCATC
ATCCATGGTC CGTCGGCGAT CCGCGACTAT ACCATCATCG ACACCCGCGC AACGATTGAC
CGCTCGATCA TCTGGCGCAA CTCGTACATC GGTGAACGCG CCGAACTGCG CGGCGCCATC
GTGATGCGGC AGTGCAACAT CAAAAGCCGT GCCGTCCTCT TTGAGGGCAC GGTTGTCGGC
GATCAGACGA TCATCAATGC TGGCGCGGTG ATCGGCGCAA ACGTCAAAAT CTGGCCCAGC
AAGGAAGTCG AGGAAGGGGC GACGATCAGT TCCAGCATCA TCTGGGGATC GCAGGGGCGC
CGTGTGCTCT TTGGGCGTTC GGGGATTTCA GGACTGGTCA ATATCGACCT GACCCCTGAG
TTCGGTGCGC GGCTCGGCGC TGCCTTCGGC GCAACGCTGC CGCGCGGCGC CGTGGTGACG
ACCAGCCGCG ACACGCACTA TACGCCGCGC ATGATCAAAC GCGGATTGGT CGCCGGGTTG
CCCTCGGCTG GCGTGCACGT TGCCGAACTC CACGACGTGC CATTGCCGGT TGCCCGTGTG
ATTACCCGCG CAATCAACGC CGCCGGCGGC GTCCATGTGC GCCTGTCACC GCTCGACAGT
CGCGTGGTGG ACATCAAATT TTTCGATGCC GACGGACTCG ATATCGATAC CGCCACCGAG
CGCAAAATCG AGGGGGTCTT CTTTCGCGAA GATTACCGGC GGGTCTATCT TGACGAAATC
GGGCGTATCA ACGAAGTGGA GCATATCAAT CAGATCTACA CCGATATGTT CCTCGGCGCG
CTCCGTCCTG ACGCACTTGC CAGCATTGCC CGCAATTTTC AGGTCGTGAT CGACTATGCG
AACGCCAATA CGTCGAATTT CCTCCCGGCC ATTCTGCGGC GGTTGCACAT CGAAGCGGTC
GAACTGAACG CCAACCTCGA CGCACAGCTT TTGTTTCAGA CGCCGCAACA ATTCGAGGCG
GGCATGGAAC GGCTGGCGCG GATTACGCCG GTTCTCGAAG CGTCGCTGGG AGCGCGACTC
GACGCAGGGG GGGAGAAAAT CTTCCTGGTT GACGATACCG GGAAACGACT ACCGGGGATG
CAGGCGCTCG CAGCCATCAC CGCGCTGGCG CTGGCAGTCA ATGGCGGGGG AACGGTTGCG
GTGCCGGTCA CGGCGCCCCG CGCATTCGAG ATGATTGCCG CCAAGTATGG AGGACGAATT
GTGCGCACCC GCGCCACCCT TGGCGCGCTC ATGCGCACGG CGGCAGCCAG TCGCGATATG
CTTTTGCTAG GGGATGGCGC CGGCAGCGTG ATTTTTCCCT CGTTCTACCC GATTGCCGAT
GGCATGTTCG CCATCGTGAA AATTGTCGAA CTGCTGGCGC TTCAACAGGT CCGCCTGTCT
GAAATTGTAC GGGATCTGCC GCACTACTTT ATGAGCCAGG CGCGCGTGCC CTGCCGCTGG
GAATTCAAGG GCAAAGTGAT GCGCATTCTG AACCAGCAGT ATCAGGACCG TAAGCTCGAT
CAGGTCGATG GGGTGAAAAT CGATCTCGGC GACGAATGGG TGCTGATTCT TCCCGATCCC
GACGGACCGT TCTTTCACGT CATCGCCGAA GGCAGCAGCG ACGAGCAGGC GCGCGTCCTG
GCAGAGAAAT ATGCCGGACT GGTGACGGGG TTGCAGTAG
 
Protein sequence
MKAVVMAGGE GSRLRPLTIN RPKPMVPIVD RHVMAHIIEL LKRHGITDIV VTVQYLANVI 
QDHFGDGSAY GVHIEYSLEE QPLGTAGSVK NAERFLREPF LVISGDALTD FDLTKIIEFH
QSHGATATIT LTRVPNPLDY GVVVVDERGY VRQFLEKPSW GEVFSDTVNT GIYVVTPEIF
RYIEKGAFTD WSKDVFPRML RSGNLPVGYV AEGYWTDIGT IEEYMRASRD YMQGKVNLPR
VGERIFDEVW VEGDVEIAPD AQFHGPVFLG HGVKIKSGAI IHGPSAIRDY TIIDTRATID
RSIIWRNSYI GERAELRGAI VMRQCNIKSR AVLFEGTVVG DQTIINAGAV IGANVKIWPS
KEVEEGATIS SSIIWGSQGR RVLFGRSGIS GLVNIDLTPE FGARLGAAFG ATLPRGAVVT
TSRDTHYTPR MIKRGLVAGL PSAGVHVAEL HDVPLPVARV ITRAINAAGG VHVRLSPLDS
RVVDIKFFDA DGLDIDTATE RKIEGVFFRE DYRRVYLDEI GRINEVEHIN QIYTDMFLGA
LRPDALASIA RNFQVVIDYA NANTSNFLPA ILRRLHIEAV ELNANLDAQL LFQTPQQFEA
GMERLARITP VLEASLGARL DAGGEKIFLV DDTGKRLPGM QALAAITALA LAVNGGGTVA
VPVTAPRAFE MIAAKYGGRI VRTRATLGAL MRTAAASRDM LLLGDGAGSV IFPSFYPIAD
GMFAIVKIVE LLALQQVRLS EIVRDLPHYF MSQARVPCRW EFKGKVMRIL NQQYQDRKLD
QVDGVKIDLG DEWVLILPDP DGPFFHVIAE GSSDEQARVL AEKYAGLVTG LQ