| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0561 |
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| Symbol | |
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| ID | 5538024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 749871 |
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| End bp | 751715 |
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| Gene Length | 1845 bp |
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| Protein Length | 614 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640892723 |
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| Product | amino acid permease-associated region |
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| Protein accession | YP_001430709 |
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| Protein GI | 156740580 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0531] Amino acid transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0441544 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGACCG AACTCAAACG TCTGGTCGTT GGCCGTCCGC TCGCCAACGA CCAGTTAGTC
CACGAGCGAT TGCCCAAGCG CCTGGCGCTT GCCGTGTTCT CATCCGACGC GCTTTCATCG
ACGGCATACG CCACCGAGGC GATCCTGATC GTTCTTTCGG CGGCTGGCGC AGCGGCGCTT
GGGCTTGCCA CCCCGATCGC GCTCGGCATC GCCGTGCTGT TGATGACCGT CGCCTTTTCC
TACAGCCAGA CGATCAAAGC CTACCCGCAG GGTGGCGGCA CATATATCGT CGCGCGCGAA
AATCTGGGAA CGATCCCGTC GCTCACGGCG GCGTCGGCAC TGTTGATCGA CTACATCCTG
ACGGTCGCGG TCAGTATGTC GGCAGGGGTA GCCGCGATCA CCTCCGCCTG GCCCGTGTTG
GATCCATACC GCGTTGAACT TGCGGTCGGA TTGATCGGAC TGGTCAGCCT GGCGAATCTG
CGCGGCATGA AGGAGTCGGG TGCGATGTTC GCTATACCGA CGTATACCTT CATTGCCAGC
ATGTTCTTGC TGATCGGCGC AGGGCTGGTG AATGTCGTGA CCGGCAACGT CACACCTGCA
CCGCCGCCGC AGACTCCTCA CCTGCCAGCC GAGGCCGGTG CGCTTTCATT ATTCCTCATT
CTGCGCGCAT TTGCAGCAGG TTGTACGGCG CTAACCGGCA TCGAAGCGAT TGCCGACGGC
GTGCCCGCCT TCAGGAAGCC TGAATCGCAT AATGCAGCGA TAACGCTGGC AATCATGGCT
GTGCTGCTCG TCACCATGTT TCTCGGTATC ACCGTACTGG CAAATGCGTA TCACATCATT
CCCGATGGCA GCCACGAGCC GGAAACGGCG AACTCACAAC TCGCGCGCGC GATTTTCGGC
GCGGGATCAC CGTTCTACTT CCTGCTCCAG ATTGCAACGA TGGCAATCCT GGTGCTGGCG
TCGAACACCG CATTTGCCGA CTTTCCGCGG CTGGCGTACT TCCTGGCGCG CGACCGCTAT
TTTCCGCGTC AGTTCACCCA ACGCGGCGAC CGTCTGGTCT TCTCCAACGG CATTGTCGCC
CTGGGCTTGA TCGCGTCGAT CCTGGTGGTT GCCTTTCACG CGCGTGAGCA GGCATTGCTG
CCGCTCTACG CGGTTGGCGT CTTTATCTCA TTTACCATCT CGCAGGTGGG CATGGTGCAG
CACTGGCGGC GAGCGCAGAC GCCGGGATGG CGCCGCAGCG CTCTGATCAA CGGTTTTGGC
GCGACGATGA CCGGCGTCGT GATGGTAGTG CTGGCAGTGA CGAAGTTCCG CGAAGGAGCG
TGGGCAGTGC TGCTCCTCAT CCCGATGGTG GTGATGGCGC TGCTGAGCAT CCACAACCAC
TACGTCGCGG TCGCCGAACA ATTGTCGCTG GAAGGCGCGC CGCGCCCTGC ACCGGTGCGG
CGTCATACGG CGCTGGTGCT GGTGAGCGGC GTTCACCGCG GTGTGATTCC GGCGCTGCAA
TATGCGCTGT CGATTGCACC CGACAATGTG ACGGCAGTCT ATGTCGATCT CGATGCAGAG
AATACGGAAA AGATCAGGCG CAAATGGGAG GAGTGGGGAT GCGGCATTCC ACTGGTCATT
CTACCATCGC CGTACCGCTC ACTGATGCAG CCGCTGCTCC AGTATATCGA CGAAGTCGAA
GCGCGCTACG ACGACGACGT GCTGACGATC ATTCTGCCGG AATTCGTGCC GTCGAAGTGG
TGGCAGTACA TGCTCCATAA TCAGACCGGG TTGCAACTCA AGGCTGCGCT CTTCTTCAGC
CGCGGTAAAG TAGTGACGAG CGTGCCGTAC CATCTGGAGC ACTGA
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| Protein sequence | MMTELKRLVV GRPLANDQLV HERLPKRLAL AVFSSDALSS TAYATEAILI VLSAAGAAAL
GLATPIALGI AVLLMTVAFS YSQTIKAYPQ GGGTYIVARE NLGTIPSLTA ASALLIDYIL
TVAVSMSAGV AAITSAWPVL DPYRVELAVG LIGLVSLANL RGMKESGAMF AIPTYTFIAS
MFLLIGAGLV NVVTGNVTPA PPPQTPHLPA EAGALSLFLI LRAFAAGCTA LTGIEAIADG
VPAFRKPESH NAAITLAIMA VLLVTMFLGI TVLANAYHII PDGSHEPETA NSQLARAIFG
AGSPFYFLLQ IATMAILVLA SNTAFADFPR LAYFLARDRY FPRQFTQRGD RLVFSNGIVA
LGLIASILVV AFHAREQALL PLYAVGVFIS FTISQVGMVQ HWRRAQTPGW RRSALINGFG
ATMTGVVMVV LAVTKFREGA WAVLLLIPMV VMALLSIHNH YVAVAEQLSL EGAPRPAPVR
RHTALVLVSG VHRGVIPALQ YALSIAPDNV TAVYVDLDAE NTEKIRRKWE EWGCGIPLVI
LPSPYRSLMQ PLLQYIDEVE ARYDDDVLTI ILPEFVPSKW WQYMLHNQTG LQLKAALFFS
RGKVVTSVPY HLEH
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