| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0542 |
|---|
| Symbol | |
|---|
| ID | 5538005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 721034 |
|---|
| End bp | 722296 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640892704 |
|---|
| Product | ABC-type branched-chain amino acid transport systems periplasmic component-like protein |
|---|
| Protein accession | YP_001430690 |
|---|
| Protein GI | 156740561 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGTTC AGTTATTAGG TGATGACAAG GAGGACGGAA TGCGCAACGA ACGACGACGG
TTCAATCTGC CGGCACTGAT GCTGGCGCTG GCAATGCTGC TGGCGGCATG TGGGGGTCAG
CCGCAGCAAC CGCCTGCGGC AGGCGGCGGA GCGACAACCG GCGGTCCGCC GATCAAGATC
GGCGCCATCT TCGATCTCAC CGGAGCGACG GCGGATGTCG GAACACCCTA CTCCAAAGGA
CAGATTGCCT TCGTTGACTG GAAGAACGCC AATGGCGGCG TGGCGGGGCG CCAGTTGCAA
CTGATCAGCC AGGATTACGC CTATGAAGTG CCGCGCGCCG AGGAACTCTA TACGCAATTC
GTCACCCAGG ACGGCGTGAT CGTCTTCTCC GGTTGGGGCA CCGGCGACAC CGAAGCGCTC
AAGGGCAAGA TTACCGCAGA CAAAATCCCC TTCATTTCGG CATCATACTC GGCAGCGCTG
GCAAATCCGG CTGAAACGCC TTACAACTTT CTGGTCGCTC CAACCTACTC GGATCAACTG
ATCATTGCTA TGAAGTGGGC GCTGGACGAC TGGAAGGCGA AGGGGAAGAG CGGCACGCCC
AAATTCGCGT ACCTCATCAA CGACAGTCCT TTCGGACGTT CACCGCTTGC TGATGGGACT
GCCTTCGCCA CTGCCAACGG CATCGAGACG CCGCTGGAGG TTCCTTCGCC GCGCGGCGCC
ACCGACCTGA CGCCGCAGTT GACGCAGATC CGCGATTATG GCGCCAACTA TGTCTTTCTC
CAGAATGTCT CAAGCCCTGC GGCGCTGGCC ATCAAGAATG CCAAAAGCCT GGGGCTTGAT
GTGCAGTTCG TCTGCCTGAA CTGGTGCGCC AACGAACTGT TGATCAAACT GGCGGGCGCC
GATGCCGAAG GCGTGGTGGG CGCCATTCCG TTCAGTCCCG AAGGTGAAGG CGCAAAAGTG
GCGCTCGAAT TTGCAAAGGA GAAAGGGATC GACTACGGTG GCGCCGATAG CACCTTCGTT
CAGGGCTGGA CGGCGATGTC CATCCTGGTG ACCGGGATCG AGCGAACGCT GAAGGACGGG
AAAGAGTTGA CCGGCGAGAA TATCAAAAAC ACTCTCGAGA CGATGGGACC GATTGAGACC
GGTGGGGTTA CGCCGCCGGT GGTCTTCAGT ACAACCGACC ACGCAGGCGT AAAGGCGCTG
CGGATGTTCC GCGTCGAAAA CGGCAAGTGG GTGGCGATCA CCGACTTCAT TAGCGCAAAG
TAG
|
|---|
| Protein sequence | MAVQLLGDDK EDGMRNERRR FNLPALMLAL AMLLAACGGQ PQQPPAAGGG ATTGGPPIKI
GAIFDLTGAT ADVGTPYSKG QIAFVDWKNA NGGVAGRQLQ LISQDYAYEV PRAEELYTQF
VTQDGVIVFS GWGTGDTEAL KGKITADKIP FISASYSAAL ANPAETPYNF LVAPTYSDQL
IIAMKWALDD WKAKGKSGTP KFAYLINDSP FGRSPLADGT AFATANGIET PLEVPSPRGA
TDLTPQLTQI RDYGANYVFL QNVSSPAALA IKNAKSLGLD VQFVCLNWCA NELLIKLAGA
DAEGVVGAIP FSPEGEGAKV ALEFAKEKGI DYGGADSTFV QGWTAMSILV TGIERTLKDG
KELTGENIKN TLETMGPIET GGVTPPVVFS TTDHAGVKAL RMFRVENGKW VAITDFISAK
|
|---|
| |