| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0474 |
|---|
| Symbol | |
|---|
| ID | 5537937 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 613696 |
|---|
| End bp | 614790 |
|---|
| Gene Length | 1095 bp |
|---|
| Protein Length | 364 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640892636 |
|---|
| Product | restriction endonuclease |
|---|
| Protein accession | YP_001430622 |
|---|
| Protein GI | 156740493 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1715] Restriction endonuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.674991 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACGTC GTCGCTCTCG CCGCTCATCG GATGCCGGAA GCGCTGTGAG TATTCTGCTC
GTCGCCCCGG TATGCGCCGG GTTTTTCTGG CAATCATGGA CGCAACTCGC ACTCGCCTGG
CAGGTCGCTG CCGTCGTGCT GGCGTGTTCA ATCCTGTTTC TGCTGTTTCT GTTCTTCATT
GATCTGTTCC GCGCTCTTCG TCAGCGCGCT CTGCTGCAGA AAGCATTGTT GGCGCTGACG
CCTTCAGAAT TTGAGGAACG GGTGCTGCTG CTCCTAAAGG ATCTCGGATG GACCAATCTT
CGACTGCGTG GCGGCAGCGG CGACCGAGGG GTCGATCTCG AAGGCGAGTT CCAGGGACAA
CGCTATATTG TCCAGTGCAA ACGACACACC AAAGCAGTGC CGCCTTCGAT GGTGCGCGAT
CTGGCGGGCG CTTTGCATAT TCAGCGCGCT GATCGTGCGT TGCTGGTGAC CACAAGTTCT
TTTACACGGC AAGGGTACGA AGAGGCTTGT AATCAGCCGA TTGAATTATG GGACGGCGAC
ATCCTGGCGC GCAAGATCAA AGAAGCCGAT GCGTTACGCG CGAACCCGGC GCACCGGCGC
AATGCCTGGC GAGGTCGGGT TGCGGTGTTG GCGACATTCG CTGTGGCGAA CGCATCGTGT
GTGCTGTTCG CATTCGTCAG CGCCGGCGCG CCGGCGCTGA CGGCGCCCGC CGCGCGAACA
AGCGGCGCTC CATCGCACAC AAACGTCACC AATCCGACGG CGATCCCCGT ACAAACGGAT
ATTCCCCCCG CCTCTCCGAC GGCGATCCCC GTACAAACGG ATATTCCCCC CGCCTCTCCA
GCGCCGACGC CAACCGAGCG CCCGGTCCTG ACAACAACCG TCTTCAACGG CGGGAATGTG
CGCGCAGCGC CCAACCTTCG AGGGGCGGTG CTCGATCAGG TCCATGCGGG AGAAATCGTC
GAACTGCTTG GTCGCTCCCC CGACGGAAAC TGGTTCTACA TTCGCAACCC GCGCAATCAG
GTCGGATGGA CGCATCGCAC GTTGCTGAAC CTCGACGCAG GCGTGGATGA TCGCCTGGAT
GTGCTGCGAC CTTGA
|
|---|
| Protein sequence | MSRRRSRRSS DAGSAVSILL VAPVCAGFFW QSWTQLALAW QVAAVVLACS ILFLLFLFFI
DLFRALRQRA LLQKALLALT PSEFEERVLL LLKDLGWTNL RLRGGSGDRG VDLEGEFQGQ
RYIVQCKRHT KAVPPSMVRD LAGALHIQRA DRALLVTTSS FTRQGYEEAC NQPIELWDGD
ILARKIKEAD ALRANPAHRR NAWRGRVAVL ATFAVANASC VLFAFVSAGA PALTAPAART
SGAPSHTNVT NPTAIPVQTD IPPASPTAIP VQTDIPPASP APTPTERPVL TTTVFNGGNV
RAAPNLRGAV LDQVHAGEIV ELLGRSPDGN WFYIRNPRNQ VGWTHRTLLN LDAGVDDRLD
VLRP
|
|---|
| |