| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0390 |
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| Symbol | |
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| ID | 5537852 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 491134 |
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| End bp | 492711 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640892553 |
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| Product | transcriptional regulator, CdaR |
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| Protein accession | YP_001430540 |
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| Protein GI | 156740411 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3835] Sugar diacid utilization regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.292319 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTCCTG TAACCGTTCA GGATGTTGTG CGTCTGGCGT TGCCCGAAGG CGTCGTGGTT
GCCGCAGGCA GCGCCGGTCT GAGTCATCAG GTGAGTTGGG TGGCAACGCC ACGCGCAACG
CCGCCGGTCT TCACGAATCT GCGCGGCGGT GAATTCGTGC TGGTGGCGAC CAGTGCGCTG
CACGCGCTCG ATGAGCGACT GACGCTTGCC AACCTGGCCG AGCGGTTGGC GCAGGTACCG
ATAGCTGCAA TTGCGGTACA GGGCGATATT CCTGATCAGG CGCGCGCGAC AGCCGAAACG
TTGCGCCTGC CGCTGCTCCA TCTTCCCGAC GCCAGCGACA TCCGTGAGGT GGAGCGGGAA
GTGCAGCGCC TGATCAGTGA TTATGACGCA CAGATTGAGC GTCGTGCCGC GCAACTCGGG
CACGTGCTGA CACAACGCTC ACTGGCGGGC GCCGGCGTCA ATGGTCTGCT GGATACGCTT
GCCGAGCGCA CAGGACGCAG CCTGGCTTTC TACAGCCCAA CCGGTGAAGT TCGCGCGCTG
CGGGCGCGCG GTCCGGCGCG GGTTGCGTTG CAGACGCTCC AGCCGCGCGG CACGGGCGCT
ACGACCCATC TGGGGCAGCA GATCTGGGTG CAGCAGATCG GGCAGATCGC ATCGGGCGAT
GCTGCCGGGC GCAACTTTGG CTATCTGGCG CTCTGCGGCG ATACGCTCGA TGACTGGGAT
CGCCTGGCGG CGCACCAGGG GGCATCGGCG CTGGCGCTAG AACTGGCGAA AGAGCAGGCG
GTGCTGGCAG CCGAGGAGCG CCTGCGCGGC GATTTCGTCC AGGCGGTGCT GGTCGGCGCC
GCTGCCGATG ATAAGACCCT GGTGCAGCGT GGGCGCGAGT TGGGGTACGA TCTGCGCCAA
CCGCACGTTG CCCTGCTCTG TGGTGTGGCG AACGGTGATG ATCGCGCGAT TGCGCGATTG
GCCGGCGCGC TGAGCGCCGC ACTCAGTGCG CTCGGCGTTG CGGCGCCGCT CATGCGCCGC
ATCGATGACG TGCTTTGCTA CATTCCAGCG GTAAGCCGAG GTCGTCGCGC TCACGAGATA
GCCGATCTCC TGCACGCCCG ATTGACCGAC GATATTCCCG GCGTGCTGGT CGCAATCGGG
CGCGAGGCGC CAGCCCTGAC CCACTGGTCG CGCTCGCTGC GCGAAGCGGA ACAGGCGCTG
CTCATCGGGC GGGAACTGCT GGGGAATGGG AGGGTGCTCG ACTTTGGCGA CCTCGGCGTG
TATCGGTTGC TCCTGCTCCT GCGCGAGTCG CCGGAATTGT GGGAGTTCTA CCGCACCACC
CTTGCAACCC TTGTCGATTA CGATCGCGAC CAGCACGGCG AACTGTTGAA GACGCTCGAA
GCCTTCTTTG ACCACAACGG CAATCTGGCG CGTACTGCCG AGGCGTTGCA CATTCACCGC
AATACGCTCC TCTACCGCCT GACGCGCATC AAGGAGATCA GCGGGCGCGA CCCAGACGTG
GCGGAGGACC GACTGGCGCT GTGGCTGGCG CTCAAAGCGC ATCGCGTGCT TAAGACGATC
AGTGAGCCGG TGACGTAA
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| Protein sequence | MPPVTVQDVV RLALPEGVVV AAGSAGLSHQ VSWVATPRAT PPVFTNLRGG EFVLVATSAL
HALDERLTLA NLAERLAQVP IAAIAVQGDI PDQARATAET LRLPLLHLPD ASDIREVERE
VQRLISDYDA QIERRAAQLG HVLTQRSLAG AGVNGLLDTL AERTGRSLAF YSPTGEVRAL
RARGPARVAL QTLQPRGTGA TTHLGQQIWV QQIGQIASGD AAGRNFGYLA LCGDTLDDWD
RLAAHQGASA LALELAKEQA VLAAEERLRG DFVQAVLVGA AADDKTLVQR GRELGYDLRQ
PHVALLCGVA NGDDRAIARL AGALSAALSA LGVAAPLMRR IDDVLCYIPA VSRGRRAHEI
ADLLHARLTD DIPGVLVAIG REAPALTHWS RSLREAEQAL LIGRELLGNG RVLDFGDLGV
YRLLLLLRES PELWEFYRTT LATLVDYDRD QHGELLKTLE AFFDHNGNLA RTAEALHIHR
NTLLYRLTRI KEISGRDPDV AEDRLALWLA LKAHRVLKTI SEPVT
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