| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0383 |
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| Symbol | |
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| ID | 5537845 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 480347 |
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| End bp | 482203 |
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| Gene Length | 1857 bp |
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| Protein Length | 618 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640892546 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001430533 |
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| Protein GI | 156740404 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.531894 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.778896 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTTCGA TGCGTGACGT ATGGCGGCGA AGCGGCGCGC TGGCGCTGCT TCTTATCCTG
ATCATCCCGG TCCTGGCGGC GTGTGGCGGT CAGCAACCGG CAGCGCAACC GACGGCAGCG
CCAGCGCAAC CGACGGCAGC GCCAGCGCAA CCGACGGCAG CGCCAGCGCA ACCGACGGCA
GCGCCAGCGC AACCGACGGC AGCGCCGACG GCGCCACCTG CCGCACAGCG GGGCGGGCGC
CTGAAAATCC TCTACTGGCA GGCGGTGACG ACCCTCAACC CGCACCTGGC GACCGGTACG
AAGGACTTTG ATGGCGCGAC CGTTATCCTC GAACCGCTGG CGCGTTACAA CGAAAAAGAT
GAACTGGTGC CCTTCCTGGC GGCTGAGATT CCCACCATCG AGAATGGCGG CGTCGCTCCG
GATGGAACCA GCGTGACCTG GAAACTCAAA CCAGGGCTCA AGTGGTCGGA TGGGAGCGAT
TTCACAGTCG ACGATATCAT CTTTACCTGG CAGTACTGTG CTGATCCGGC GACGGCCTGC
ACGACGAAGG CGGTCTTCGA TCCGATCGCC AATGTCGAGA AGGTCGATGA TACGACGGTC
AAGATCACCT GGAAAGAGCC TACTGCCTAC CCCTACATCG CCTTCGTCGG TCCGAATGGC
ATGATCCTCC AGAAGAAGCA GTTCGAGAAG TGCATCGGCG CGGCAGCCAG CACCGATGCG
GCATGCCAGG CGGCGAATCT GGCGCCGATC GGTACGAATG CATGGAAGCT GAAGGAGTTC
AAGCCGGGCG ATGTGGTGAT CTATGAGCGT AACCCCTTCT TCCGCGATGC CGACAACGTC
TTCTTCGACG AGGTCGAGAT CAAGGGCGGC GGTGATGCTG CCTCAGCCGC GCGCGCCGTC
TGTGAGACGG AAGAGGTGGA TTTTGCGTGG AACTTGCAGA TTCCGAAGGC GGTGCTCGAG
CCGATCCTTG CGAGCGGTAA GTGCGACCCG CTGGCCGGCG GTTCGTTCGG TGTCGAGCGT
ATTGTCGTCA ACTTCGCCAA CCCCGATCCG GCTCTCGGCG ATAAGCGCAG TGAACCGGAT
CAACCGCATC CGTTCCTGAC CGATCCTGCC GTGCGCAAGG CGATCTCGCT GGCGATTGAC
CGCAAGGCGA TTGCTGAGCA GTTGTACGGA CCGACCGGCA AGCCGACCTG CAATGTGCTG
GTCGTGCCTG CATCGGTTAA CTCACCGAAC CTGACGTGTG AGCGCGATGT CGAAGCGGCG
AAGAAGTTAC TCGAGGATGC GGGCTGGAAG TTGAACGGCT CGGTGCGCGA GAAGGAAATC
GGCGGGAAAC CGGTCCGGCT TGTCGTCAGT TTCCAGACCT CAATCAACCC GCTGCGCCAG
AGCACGCAGG CGATCATCAA GTCGAACCTG GCGGAGATCG GCATTCAGGT GAACGTCAAA
GCCATCGATG CCAGTGTCTT TTTCGGCGGT GATGAGGGCA ACCCGGATAC GCTGAACAAG
TTCTACGCCG ACCTCCAGAT GTATACGAAC GGTCCGAGCA GCGCCGATCC GCAGCAATAC
CTCCAGGGGT GGCTCTGCTC CGAGCGCGCG TCGGCGGCGA ACCGGTGGAA TGGCAACAAC
GACGGACGTT ATTGCAACCC GGAGTATGAC GCCCTCTTCG AGCAGTTGAA GAAGGAACTT
GATCCGAAGC AGCGCGCCGA ACTGGCGATC AAGATGAACG ATCTGCTGGT GACCGATGGC
GCCATCATTC CGCTTATCAA CCGCCAGACG CCGAATGCGA AGGTGAAGGC GCTCAAAGGT
CCGACCTTCA ATACGTTCGA CTCGAGCATC TGGAATATCG CCTCCTGGAG CAAGTAA
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| Protein sequence | MRSMRDVWRR SGALALLLIL IIPVLAACGG QQPAAQPTAA PAQPTAAPAQ PTAAPAQPTA
APAQPTAAPT APPAAQRGGR LKILYWQAVT TLNPHLATGT KDFDGATVIL EPLARYNEKD
ELVPFLAAEI PTIENGGVAP DGTSVTWKLK PGLKWSDGSD FTVDDIIFTW QYCADPATAC
TTKAVFDPIA NVEKVDDTTV KITWKEPTAY PYIAFVGPNG MILQKKQFEK CIGAAASTDA
ACQAANLAPI GTNAWKLKEF KPGDVVIYER NPFFRDADNV FFDEVEIKGG GDAASAARAV
CETEEVDFAW NLQIPKAVLE PILASGKCDP LAGGSFGVER IVVNFANPDP ALGDKRSEPD
QPHPFLTDPA VRKAISLAID RKAIAEQLYG PTGKPTCNVL VVPASVNSPN LTCERDVEAA
KKLLEDAGWK LNGSVREKEI GGKPVRLVVS FQTSINPLRQ STQAIIKSNL AEIGIQVNVK
AIDASVFFGG DEGNPDTLNK FYADLQMYTN GPSSADPQQY LQGWLCSERA SAANRWNGNN
DGRYCNPEYD ALFEQLKKEL DPKQRAELAI KMNDLLVTDG AIIPLINRQT PNAKVKALKG
PTFNTFDSSI WNIASWSK
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