Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0339 |
Symbol | |
ID | 5537801 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 421132 |
End bp | 423015 |
Gene Length | 1884 bp |
Protein Length | 627 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640892502 |
Product | GTP-binding protein TypA |
Protein accession | YP_001430489 |
Protein GI | 156740360 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1217] Predicted membrane GTPase involved in stress response |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR01394] GTP-binding protein TypA/BipA |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.034053 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTATCGCC CCGACCGCAA CGGTCGGGGC ATTTTGCGGA TAAACGAGAT GATTCGAAGA AACGACATTC GTAACATTGC CATTATTGCC CATGTTGACC ACGGCAAAAC GACCCTGGTC GACGGGTTGC TGCGCCAGGG GCGCATTTTT CGTGAGAATC AACCGGTCGC CGAGCGTGTG CTGGACTCGA ATGACCTTGA GCGCGAACGC GGCATTACGA TCATGGCGAA GAACACCGCC GTCACCTACC GCGGCGTCAA GATCAATATC GTCGATACGC CGGGGCATGC CGACTTCGGC GGTGAGGTCG AGCGGGTGAT GAATATGGTC GATGGCGTGC TGCTGCTGGT CGATGCAGTC GATGGTCCTA TGCCGCAAAC GCGGTTCGTT CTGCGCAAGG CGTTGCAGGC CGGGCATCGC GCAATCGTCG TCGTCAACAA GATCGACCGT CCGAATGCGC GCCCGAACCA CGTCGTCAAT GAAACCTTCG ACCTGTTCAT CGAACTCGGT GCGACTGATG AACAGGCTGA GTTTGCCACG ATTTACACCA ATGCGCTCAA AGGGGTCGCC GGACGATCGC CGCTCAAAAT CCACGACTCG CTCGAGCCAC TGTTCGATGC TATCCTCGAT CAGATCCCCG GTCCACAGGT CGATCCGGAC GGTCCGGCGC AGTTGCTGGT GACGAACACG GTATACGACG ATTACAAAGG CAAGATTCTG ATCGGGCGCT TGCGGCGCGG GACATTGCGC AAAGGACAGG CGGTGGCGCG TATCGCGCGC GATGGCAGCG TGATCCCCGC AAAGGTCAGT CAATTGTTCG TCTTCAATGG CCTGGACCGG AACGAGATCG AGGAGGTCGC CGCCGGCGAC ATTATTGCCA TTGCAGGGAT CGGTGACGCC AGCATTGGCG ATACGATCGC CGATGCGCAA TGCCCGGAGG CGCTGCCATC AATTGCGGTC GAAGAGCCGA CGGTGCGCAT GACGTTTAGC GTCAATACCA GCCCCTTTGC CGGACGTGAA GGAACCCACG TCACCTCACG CACATTGCGC GAGCGACTCT ACCAGGAACT CGAGCGCGAT GTGGCGCTGC GTGTCGCCGA TACTGACTCG CCTGACGCTT TCATCGTCAG TGGACGCGGT GAACTCCACC TCACGATTCT CATCGAGACG ATGCGCCGCG AGGGGTATGA GTTCCAGGTC TCGCGTCCTG AGGTTATTTT CAAAGAGATC GATGGGGTCA AATACGAACC AATCGAGCAG GTCGAACTGG AAGTCGCCGA ACCATATCAG GGCGCCGTCA TCGAGTTGAT GGGTCAGCGG CGTGGGCAGA TGCGCGATAT GAGCATCCGC GATGGCGGAT CGGTGCATAT GATTTTCCAC GTGCCAACCC GCGGTCTGCT TGGCTTCCGC CAGACGTTCC TGACCGCCAC GCGCGGCGAG GGGGTGATGA ACTCGTTGTT CATCGGGTAT GAACCGCTGG CAGGCGAGAT CGTCACGCGA TCCAACGGCT CGCTCGTCGC GTCGGAACGT GGCGTCGCCA CTGCCTATGC GCTCAACCAG GCTCAGGAGC GCGGAACACT CTTCATCACA CCCGGCACGG AAGTCTACGA AGGCATGATT GTCGGTCAGC ACATCCGCGA GCGCGACCTG GAAGTAAACG TCTGTCGCCG CAAACATCTG ACGAACATCC GCTCCTCGAC GGCGGAAGAG GGCATCCGAT TAGAAACGCC GCGCGTGCTG AGTCTTGATG ACGCCATCGA GTACATTAGC GACGATGAGT TGGTCGAAGT GACGCCGAAG AGCATCCGGT TGCGGAAACG ATTGCTCACC CTCACCGAGC GCCAGCGCGA ACAGAAGCGG CGAGAGACCG GGGTTAAGAG TTAG
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Protein sequence | MYRPDRNGRG ILRINEMIRR NDIRNIAIIA HVDHGKTTLV DGLLRQGRIF RENQPVAERV LDSNDLERER GITIMAKNTA VTYRGVKINI VDTPGHADFG GEVERVMNMV DGVLLLVDAV DGPMPQTRFV LRKALQAGHR AIVVVNKIDR PNARPNHVVN ETFDLFIELG ATDEQAEFAT IYTNALKGVA GRSPLKIHDS LEPLFDAILD QIPGPQVDPD GPAQLLVTNT VYDDYKGKIL IGRLRRGTLR KGQAVARIAR DGSVIPAKVS QLFVFNGLDR NEIEEVAAGD IIAIAGIGDA SIGDTIADAQ CPEALPSIAV EEPTVRMTFS VNTSPFAGRE GTHVTSRTLR ERLYQELERD VALRVADTDS PDAFIVSGRG ELHLTILIET MRREGYEFQV SRPEVIFKEI DGVKYEPIEQ VELEVAEPYQ GAVIELMGQR RGQMRDMSIR DGGSVHMIFH VPTRGLLGFR QTFLTATRGE GVMNSLFIGY EPLAGEIVTR SNGSLVASER GVATAYALNQ AQERGTLFIT PGTEVYEGMI VGQHIRERDL EVNVCRRKHL TNIRSSTAEE GIRLETPRVL SLDDAIEYIS DDELVEVTPK SIRLRKRLLT LTERQREQKR RETGVKS
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