| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0320 |
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| Symbol | |
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| ID | 5537782 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 392797 |
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| End bp | 394467 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640892484 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001430471 |
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| Protein GI | 156740342 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.144423 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCGCC GCATTCGCTG GCAGATTCTG ATAGCTGCGA TCAGTTCCCT GACCGTGCTC
CTCCTCATGA GTTACCTGGC GCTGACGCGC GCATCGGTCG CCCGTCCGCT GACAGGCGGT
GATTATGTCG AAGGGGTCGT CGGCGCACCG CTGCATCTCA ATCCACTGCT GGTCGATCCT
GCCGCCGATC CGGTTGCTGC CGATCTACAC CGCCTGATCT TTGAGGGATT GACACGCCCC
GGTCCTGATG GATTGCCCAT GCCGGCGCTT GCCGAGTCCT GGACGGTCGA TGACAGTGGG
ACGGTCTACA CCTTTACGCT GCGCAGCGGC GTCGCCTGGC ACGATGGCGC GCCGGTGACG
GTCGATGATG TGCTGTTCAC GATGCGCGCC GTGCAGGGTC CTGCGTTTGC CGGTGATCAG
AATGTCGCCG CTTTCTGGCG CACGGTTCTG GTTGATCGCG CCGGAGAGCG CAGCGTCAGT
TTCCGCCTTG ACTCTCCATT TGCGCCTTTC TTAAGGTTGA CTGGTTTTCC GATCCTGCCG
GCGCACCTGT TGCGTGATAC GCCGCCGGAA CAGTGGGAGG CGATGGCATT CAACCGCTTG
CCGGTTGGCG CCGGTCCGTA TCGATTGATC GAACGAGATG ATCAACATGC TCTTTTGCGC
GCCAACTCGT CCTACTTTGG TTCGCCGCCG TTCATTGAAA CGATTGAACT GCGGTTCTTC
CGCACCGAAC AGGATGCGCT CGCAGCCCTG ACGCGCGGTG ACATTCAGGG TCTTGCTTTC
CTGAGCACCG GCGCCCTGGC GGATGTGAAC CTGCCGCGCA ATGTGGTGCG CCGACAGGCA
TTGCTGGATG CCTGCACCGT CCTGACCTTC AATCTACGCG ATGGTCCGCT CACTGAGATT
GGCGTGCGCC GCGCATTGGC GATGGCGCTC GATAAGGATG CGTTGATCGC CGGAGTGCTG
AACGGTCAGG TCGCACGGCT TGATACGCCG ATCCTGCACG GATGGTGGGC TGAAGCGCCT
GATGTGCAGT GGTACGAACC CGATCCCGCA CGAGCCGTAT CCGCACTCGA TGCGCTGGGA
TACGTCGCCG GCGCCGATGG CATTCGCGCA CGCAACGGTC AACGACTTGC CTTTACCCTC
CTGACCGACA GTTCTCCCAA ACGGCGCGCG GTAGCAGAAG AGATCGCCCG CCAGTGGAGC
GCCATCGGCG TGCGCATTGT GATCGAGCAG GTTGAGTCCG GCGATCTCCA GCGCCGTTTG
GAAACCCACG ACTTTACTAT GGCGCTGCAC GGCTGGCAAC GGCTCGGTTC CGATCCCGAC
GTCTTTGAAC TCTGGCATTC GAGCCAGGCG GAACGCGGAC GGAACTACAC AGGTCTGACC
GATGCTGACA TTGATGAACT GCTCTACAAC GCGCGTAAAA TCTACGACAT CGCTGACCGC
GCCGCGCTCT ACAACGAATT TCAGCAACGC TGGGTCGATC TGGCGCCGGG GATTATGCTG
TATCAACCGT TCCTGATTCA TGCCACCGTT GCCGACCTTG GCAGCATCAT CGCTGTTGCG
CCTGATGAAG CCGTTTCGCC GCGCCTGATC ATGGGGCGCG AGGGGCGCTT CGCCGACGTC
AACCGTTGGT ATCTGCGCAG CGATCGCGAA ATCCGCGGCG ATTTGCGGTG A
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| Protein sequence | MARRIRWQIL IAAISSLTVL LLMSYLALTR ASVARPLTGG DYVEGVVGAP LHLNPLLVDP
AADPVAADLH RLIFEGLTRP GPDGLPMPAL AESWTVDDSG TVYTFTLRSG VAWHDGAPVT
VDDVLFTMRA VQGPAFAGDQ NVAAFWRTVL VDRAGERSVS FRLDSPFAPF LRLTGFPILP
AHLLRDTPPE QWEAMAFNRL PVGAGPYRLI ERDDQHALLR ANSSYFGSPP FIETIELRFF
RTEQDALAAL TRGDIQGLAF LSTGALADVN LPRNVVRRQA LLDACTVLTF NLRDGPLTEI
GVRRALAMAL DKDALIAGVL NGQVARLDTP ILHGWWAEAP DVQWYEPDPA RAVSALDALG
YVAGADGIRA RNGQRLAFTL LTDSSPKRRA VAEEIARQWS AIGVRIVIEQ VESGDLQRRL
ETHDFTMALH GWQRLGSDPD VFELWHSSQA ERGRNYTGLT DADIDELLYN ARKIYDIADR
AALYNEFQQR WVDLAPGIML YQPFLIHATV ADLGSIIAVA PDEAVSPRLI MGREGRFADV
NRWYLRSDRE IRGDLR
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