Gene Rcas_0301 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0301 
Symbol 
ID5537763 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand+ 
Start bp376114 
End bp376791 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content57% 
IMG OID640892465 
ProductGTP cyclohydrolase I 
Protein accessionYP_001430452 
Protein GI156740323 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0302] GTP cyclohydrolase I 
TIGRFAM ID[TIGR00063] GTP cyclohydrolase I 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.000150261 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.11188 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACATATC ACAATGGCAA CAATGGACAC CACGACCATG CGCTCGCAGA CGTGGACGAG 
CGCGAATACG AAACCCTGAT CATCCAGGGA CGCGGCAAAC TTGAAGGAAT GAGTTATCAT 
TCCGACGCAG CGATTGAAGA CGCCGTGCGA GTCATTCTGA AGCAGATCGG CGAAAATCCT 
GAACGTGAGG GGTTGCAGAA GACGCCGTCG CGCGTCGCCA AAATGTACGC GGAACTGACT 
GCCGGGTACC ATATTGATCC CGACGCGCTG ATCAACGAAG CGGTCTTCAG CGTCGGCTAC 
GATGAAATGG TGCTGGTCAA GAATATCGAG TTCTCTAGTC TGTGCGAGCA CCATATGCTT 
CCTTTTATGG GGCGGGTGCA CGTCGCGTAC ATTCCCAACG GCAGAGTCGT GGGGTTGAGC 
AAGATTCCGC GCATTGTCGA GATGTTCGCG CGGCGCTTGC AGGTGCAGGA ACGGATGACA 
GTACAGATCG CCGATTTTAT CAATCAGCGG CTCGAACCAC TGGGCGTGGC GGTCGTCGCC 
GAGGGCGTTC ATATGTGTGC AGTGATGCGC GGTGTCAAGA AAGCCGGCGC CACCATGGTC 
ACATCCGCGA TGCGCGGGGT CTTCCGCGAT GATCCGAAGA CACGCAGTGA GTTCATGGCG 
CATATCGAGC GGGGATGA
 
Protein sequence
MTYHNGNNGH HDHALADVDE REYETLIIQG RGKLEGMSYH SDAAIEDAVR VILKQIGENP 
EREGLQKTPS RVAKMYAELT AGYHIDPDAL INEAVFSVGY DEMVLVKNIE FSSLCEHHML 
PFMGRVHVAY IPNGRVVGLS KIPRIVEMFA RRLQVQERMT VQIADFINQR LEPLGVAVVA 
EGVHMCAVMR GVKKAGATMV TSAMRGVFRD DPKTRSEFMA HIERG