Gene Rcas_0238 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0238 
Symbol 
ID5537700 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp294460 
End bp295053 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content62% 
IMG OID640892402 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001430389 
Protein GI156740260 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGTACC CATCTCCACC AACCGACAGT CGCAACGAAA GCGAAGCGCA GATTATTGCG 
CGCGCCAAGG CGGGAGACGC CGATGCCATC AGCATGTTGT ACGAACGCTA TGCGCCGCAG
GTGCGCCGGT ACATTGTGTC GCGCCTGGGT GATCCGGTGC TGGCTGAAGA TGTGTGCAGC
GATGTATTCG TCAAAATGCT GGAAGGTCTG GATCGTTACG AGGATCGTGG TTGGCCCTTC
TCTGCCTGGC TCTACCGCAT TGCCTACGCG CGAACAATGG ATATGCTGCG TCAGGCGCGG
CGGCGTCCGT CGGTGCCGCT CGATGAGAGT GCGCCGCATG CGCTCGAACC TCCCGATGAG
GCGGTCATTT CCCGCATTGC CTACCATGAA CTTCGGAGCG TGATGCGGGT GCTGACCCGC
GATCAGCGCC TGGTGCTACG CCTGCGCTTC GATGAGGATC GCACCCTTGC CGAGATCGCC
GAGTCGCTTG GGCGCACGGT CGGGTCGGTA AAGGCGCTGC AACACCGGGG ATTGACGCGC
CTGGCTGAAG CGCTTGCCGA TCATCCGGCG CATCAACCGG TTTCCGTCTT CTGA
 
Protein sequence
MVYPSPPTDS RNESEAQIIA RAKAGDADAI SMLYERYAPQ VRRYIVSRLG DPVLAEDVCS 
DVFVKMLEGL DRYEDRGWPF SAWLYRIAYA RTMDMLRQAR RRPSVPLDES APHALEPPDE
AVISRIAYHE LRSVMRVLTR DQRLVLRLRF DEDRTLAEIA ESLGRTVGSV KALQHRGLTR
LAEALADHPA HQPVSVF