Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_0238 |
Symbol | |
ID | 5537700 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 294460 |
End bp | 295053 |
Gene Length | 594 bp |
Protein Length | 197 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640892402 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_001430389 |
Protein GI | 156740260 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGTGTACC CATCTCCACC AACCGACAGT CGCAACGAAA GCGAAGCGCA GATTATTGCG CGCGCCAAGG CGGGAGACGC CGATGCCATC AGCATGTTGT ACGAACGCTA TGCGCCGCAG GTGCGCCGGT ACATTGTGTC GCGCCTGGGT GATCCGGTGC TGGCTGAAGA TGTGTGCAGC GATGTATTCG TCAAAATGCT GGAAGGTCTG GATCGTTACG AGGATCGTGG TTGGCCCTTC TCTGCCTGGC TCTACCGCAT TGCCTACGCG CGAACAATGG ATATGCTGCG TCAGGCGCGG CGGCGTCCGT CGGTGCCGCT CGATGAGAGT GCGCCGCATG CGCTCGAACC TCCCGATGAG GCGGTCATTT CCCGCATTGC CTACCATGAA CTTCGGAGCG TGATGCGGGT GCTGACCCGC GATCAGCGCC TGGTGCTACG CCTGCGCTTC GATGAGGATC GCACCCTTGC CGAGATCGCC GAGTCGCTTG GGCGCACGGT CGGGTCGGTA AAGGCGCTGC AACACCGGGG ATTGACGCGC CTGGCTGAAG CGCTTGCCGA TCATCCGGCG CATCAACCGG TTTCCGTCTT CTGA
|
Protein sequence | MVYPSPPTDS RNESEAQIIA RAKAGDADAI SMLYERYAPQ VRRYIVSRLG DPVLAEDVCS DVFVKMLEGL DRYEDRGWPF SAWLYRIAYA RTMDMLRQAR RRPSVPLDES APHALEPPDE AVISRIAYHE LRSVMRVLTR DQRLVLRLRF DEDRTLAEIA ESLGRTVGSV KALQHRGLTR LAEALADHPA HQPVSVF
|
| |