| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0197 |
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| Symbol | |
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| ID | 5537658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 236232 |
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| End bp | 238049 |
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| Gene Length | 1818 bp |
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| Protein Length | 605 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640892360 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001430348 |
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| Protein GI | 156740219 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.386701 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCAGC AACGACTCAG AAGTTTCGTG CAGCGTGTTC TGATCCTGAC GGTCGCCTGC
ATCGCACTGG CGGGATGCAC GATTGAGGGA GGCGTCCCGA CGCCGACGCC TGAACCAACC
CTCCCGGCGA GCGCTCCCAT TCCCACCGGT GCAGTGGTTG CCGAACGCAT CGCCGAGCGC
AACGACACAT GGATGATCGG GGCGCTTGAT CTTCCAGCGG ATCTGTACCC ATACCCGCAG
TCCGCCGCCA CCCGCCGCGC ATCGGCGACG ATCACCGAGT TGCTCTTCCC GTCGCCAATC
CTACCCTATA ACTACGGTTA TACCGCAACA GGAGTGCTCG AACGCATCCC CACACTCGAA
AATGGCGATG CGGAAATGCG CAAGGTCGAT GTCTATCTCG ATGCCACCGG CGCGATAACC
ACTACGGTCA CCGATGTCGT CACCCAGGTC GATCAACTGG TGATCACCTT CCGCTGGAAC
CCGCGGCTGC GCTGGTCCGA CGGCACGCCG GTTACAGCGG ACGACTCGGT GTTCGCCTAT
GAATTGGCGA AAGCCGCGCC GCCAGGCGAC GCGGCAGCCG AATTGCTGGC AAAAACCGCT
ACATACGAGA AGATCGATGA TCATACCACG CGCGCGGTGC TCCGCCCCGA TTATGTGGGG
GCGGCATATT TTGTGAGTTA CTGGACGCCG CTGCCACGCC ATCTGCTCCA GGGCGTCGAT
CCGGCGCGGG TGCGCGAGAG CGCATTTGCT CGTCAACCGG TCGGGTATGG TCCCTATATG
CTGGTCGAAC GCACTGCCAC TGAACTGCGC TTCGAGCGCA ACCCGCATTA TTTCGGTCCG
ACGCCAGCGG CGTCGCGGCT GGTCGTGCGC GTGTTTCCCG ATCTCGACCT GCTGCGCGCC
AATCTGCTCA ACGGCAATCT CGATCTGGGC ATTGCTGATC GGATCTCGAC CGCCCCGCTG
ATCCGCTTCG ACACCGACGC CGCCGAAGGC GCCGTACAGG TCTTCACCGT CTCCAGTCCA
GTTTGGGAAC ATATTCTGTT CAATCTGGAT GTTCCGGCAC TCCAGGATAT TCGGGTGCGG
CGCGCGCTGG CGTATGGCAC AAACCGGCAG GCGATGGTCG ATGCGCTCTT TGGTGGACGA
ACGCCGGTTC TGGATGGTTG GGTGGTGCCG GAGCACCCCC TTGCCGCGCC GCCCGATCAG
GTGACCCGCT ACCCGTATAA TCCCGATCAG GCACGGCAGT TGCTCGATGA AGCCGGATAT
ACCGACCCCG ATGGCGATGG CATCCGTGCG TCGCCCGATG GCGCCACGCT AACGCTGCAA
CTGCTGACGA CGCAAGGGAG CGACGTGCGG CGCGCAATTG CCCGCCGTTT TCAAGCAGAT
ATGCGCGCAA TCGGCGTCGC AATCGATATT AACGAAGCGT CGCCCGACGA GGTGTTCGAC
TCAGATGGAC CCCTCTACCT CCGACAGTTC GATCTTGCGC TCTTCGGGTG GATCGCTGGA
CCAGAGCCGG GCGGGTTGCA ACTCTGGAGT TGCGCCGCCG TTCCCGCCGA GAGCAACAAC
TATCGTGGCG AGAACTTTGC CGGCTGGTGT TTCCGCGACG CGGATCGCGC GGTACGCACC
GCCGACACGA CCCTCGACCC CGCCGAACGG GCTGAGGCGT ACCTGCGTCA GCAGCAACTG
TGGACGCAGG AACTCCCGGC GATTCCTCTG TTTCAACGCC TGAGCATCGT GGTGGCAGCA
CCCGATGTGC GTGGGCTTGC CCCCGATCCC CTCGCGCCGG TGACATGGAA TGTGGCGGCG
TGGAAAAGGG AAAAGTAA
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| Protein sequence | MTQQRLRSFV QRVLILTVAC IALAGCTIEG GVPTPTPEPT LPASAPIPTG AVVAERIAER
NDTWMIGALD LPADLYPYPQ SAATRRASAT ITELLFPSPI LPYNYGYTAT GVLERIPTLE
NGDAEMRKVD VYLDATGAIT TTVTDVVTQV DQLVITFRWN PRLRWSDGTP VTADDSVFAY
ELAKAAPPGD AAAELLAKTA TYEKIDDHTT RAVLRPDYVG AAYFVSYWTP LPRHLLQGVD
PARVRESAFA RQPVGYGPYM LVERTATELR FERNPHYFGP TPAASRLVVR VFPDLDLLRA
NLLNGNLDLG IADRISTAPL IRFDTDAAEG AVQVFTVSSP VWEHILFNLD VPALQDIRVR
RALAYGTNRQ AMVDALFGGR TPVLDGWVVP EHPLAAPPDQ VTRYPYNPDQ ARQLLDEAGY
TDPDGDGIRA SPDGATLTLQ LLTTQGSDVR RAIARRFQAD MRAIGVAIDI NEASPDEVFD
SDGPLYLRQF DLALFGWIAG PEPGGLQLWS CAAVPAESNN YRGENFAGWC FRDADRAVRT
ADTTLDPAER AEAYLRQQQL WTQELPAIPL FQRLSIVVAA PDVRGLAPDP LAPVTWNVAA
WKREK
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